Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F10
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   105   6e-24
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    30   0.38 
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    29   0.88 
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   3.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   4.7  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   4.7  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    26   6.2  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    26   8.2  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   8.2  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    26   8.2  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  105 bits (253), Expect = 6e-24
 Identities = 46/128 (35%), Positives = 80/128 (62%)
 Frame = +3

Query: 420 AFQDSALDWARDHRMHHKYSETDADPHNATRGFFFSHIGWLLVRKHPELKRKGKGLDLSD 599
           AF+ S   W+RDHR HH+Y++TD DP+N  +GF+++H+GW+++ ++P  +R G+  D+SD
Sbjct: 135 AFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP--RRIGRS-DVSD 191

Query: 600 LYADPILRFQKKYYLILMPIACFILPTVIRVYFWNESWINAFFVATLXRYTFILNVTWLV 779
           L +DP + F  +++L +     FI P++     W + +   +F A + R  F+ + T+ V
Sbjct: 192 LNSDPFVMFNHRHFLPIASFMAFIFPSLFCGLLWGD-YRGGYFYAGVCRLVFVHHATFCV 250

Query: 780 NSAAPXXG 803
           NS A   G
Sbjct: 251 NSLAHLIG 258



 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 36/84 (42%), Positives = 50/84 (59%)
 Frame = +2

Query: 179 NYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWA 358
           N+ + L W + +L   L + A+YG  +F    + +T +FA I Y  SGLGITAG HRLW+
Sbjct: 57  NWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWS 114

Query: 359 HKSYKAKWPLRVILIIFNSLGFSG 430
           H++YKAK PL   L    +  F G
Sbjct: 115 HRAYKAKKPLEYFLAAGGAAAFEG 138


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +2

Query: 224 YLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAHKSYKAKWPLRVILI 403
           Y+ +A L   ++ LF     T L   IL +++ LGI A  +  +AH      WP R++L 
Sbjct: 514 YILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHGLQFINWP-RLLLP 572

Query: 404 IF 409
            F
Sbjct: 573 SF 574


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 164 QVCWTVLSLEYQHHFQRE-HHLHPLHWAPYWSVISN 60
           QVC+  +    +H+F  + HH+  LH +P   ++SN
Sbjct: 42  QVCFEAIKYIQRHYFSSQSHHVTYLHQSPLEKLVSN 77


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 182 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVM 316
           Y KKL W  I+ F Y H   +   Y+ L H     ++F+   Y++
Sbjct: 440 YTKKL-WSLIVNFEYTHAPLIPDAYMKLLHLYEFPNIFSKYDYIL 483


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 315 CQDLASQQVHIDYGHINHTKQSGLYVLSLSSSIPWAFQDSALDWARDHRMHHKYSETDAD 494
           C+D+ +   H++       ++S    L    +   A     LD A+D R+ H   +TD  
Sbjct: 745 CKDIINFHAHLEKEEKKRIERSARQRLQALRADDEAAYLQLLDKAKDTRITHLLKQTDQY 804

Query: 495 PHNATR 512
             N TR
Sbjct: 805 LENLTR 810


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 133 YSRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVWRLPF 261
           YSRL    H C  SR++  ET+ ++ N        C+ + L +
Sbjct: 329 YSRLLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDY 371


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 525 RKRNLVWHYVGRHQSRSIYDACDDHVPNLKQNPEKPK 415
           +K+N+  H VGR +S    +A   H P     P+ PK
Sbjct: 80  KKKNIHGHRVGRVESDKTKEAERQHKPRKPFIPKNPK 116


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +2

Query: 155 STPVQQADNYPKK--LVWRNIIL---FTYLHIAALYGGYLFLFHAKWQTDLF 295
           S+P  Q  ++ K   +VW ++++   F+Y+  AA Y  +  L+   W+  L+
Sbjct: 64  SSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLY 115


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 741 KESQRRTR*SKTHSKNTPESL-LAK*SKRLASELNSTFSGIEEWDQHISH 595
           K+ Q+     K   K T  ++ +     ++ S+  + FS +EE D+H SH
Sbjct: 68  KKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSH 117


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 669 ILPTVIRVYFWNESWINAFFVATLXR 746
           ILP  I++Y W  + I+ FF   L R
Sbjct: 335 ILPNQIQIYVWYGASISIFFALILLR 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,826,796
Number of Sequences: 5004
Number of extensions: 87115
Number of successful extensions: 228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)