Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_F10
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503 32 0.70
09_02_0520 - 10160551-10160939,10160986-10161220 31 1.2
12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258... 31 1.6
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 30 2.1
12_01_0651 - 5507935-5509638 30 2.8
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 30 2.8
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 29 6.5
11_01_0447 + 3464791-3465358,3465364-3465641 28 8.6
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070... 28 8.6
>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
Length = 685
Score = 31.9 bits (69), Expect = 0.70
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 672 LPTVIRVYFWNESWINAFFVATLXRYTFILNVTWLVNSAAPXXGWKXPTTRISSHPRTSP 851
LP V+ V F + S ++ V + ++F +TW+ +S P P ISS P SP
Sbjct: 235 LPEVVAVGF-SASTGSSIEVHRVLSWSFNSTLTWMNSSVMPPGAAPVPPETISSEPIMSP 293
Query: 852 G 854
G
Sbjct: 294 G 294
>09_02_0520 - 10160551-10160939,10160986-10161220
Length = 207
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 672 LPTVIRVYFWNESWINAFFVATLXRYTFILNVTWLVNSAAPXXGWKXPTTRISSHPRTSP 851
LP V+ V F + S ++ V + ++F +TW+ S P P +SS P SP
Sbjct: 5 LPEVVAVGF-SASTGSSIEVHRVLSWSFNSTLTWMDFSVMPPGAAPVPPETVSSEPIMSP 63
Query: 852 GXGV 863
G V
Sbjct: 64 GAAV 67
>12_01_0335 -
2583476-2583493,2583919-2583965,2584151-2584274,
2584421-2584665,2585281-2585404,2585424-2585456
Length = 196
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 579 CPFSSVLDVSSLEASQCERKRNLVWHYVGRHQSR 478
CP + + +EASQC+ R + H GRH SR
Sbjct: 108 CPDDFLSCLICMEASQCDDPRYIPKHKFGRHMSR 141
>06_03_1508 - 30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 179 NYPKKLVWRNIILFTYLHIAALYGGYLF-LFHAKWQTDLFAYILYVMSGLGITAGAHRLW 355
N P+ +W N ++ L GY F +F L++ +L V+ L T +
Sbjct: 892 NNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGSAQLWSALLPVVLTLIATQQKDTFF 951
Query: 356 AHKSYKAKWPLRVILIIFNSLGFSG 430
A+ Y KW L +I N+ +SG
Sbjct: 952 ANLCY-TKWALEG-FVIANAQRYSG 974
>12_01_0651 - 5507935-5509638
Length = 567
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 582 PCPFSSVLDVSSLEASQCERKRNLVWHYVGRHQSRSIYDACDD 454
PC F S L +L C++ N+ +HY H ++I CD+
Sbjct: 502 PCEFKSSL---ALLVENCDKLMNISFHYPPGHDQKNIRVFCDN 541
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Frame = +3
Query: 654 PIACFILPTVIRVYFWNESWINAFFVATLXRYTF-------ILNVTWLVNSAAPXXGWKX 812
P A +L +Y W +SWINA A Y F L + W P K
Sbjct: 197 PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLYQLGIDWTTPEHGPINSAKR 256
Query: 813 PTTRISS 833
P + +SS
Sbjct: 257 PRSVLSS 263
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 92 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII 214
+ D G L D + PV + DN+ K++WRNI+
Sbjct: 807 IMDTLGALALATEPPNDAMMKRPPVGRGDNFITKVMWRNIV 847
>11_01_0447 + 3464791-3465358,3465364-3465641
Length = 281
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 759 K*MYNGKESQRRTR*SKTHSKNTPESLLAK*SKRLASELNSTFSGIEEWDQHISHLGRD 583
K + N +E+ +T S +PE L K ++ L S L + F+ IE I H+ R+
Sbjct: 8 KALLNSQEAAASVAAGRTRS--SPEELAQKKNELLRSYLGNAFADIEHLVSQIEHIQRE 64
>05_05_0338 +
24204301-24206262,24206337-24206495,24206864-24207035,
24207544-24207842,24208301-24208355,24208438-24208487,
24208522-24208827
Length = 1000
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 92 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII---LFTYLHIAAL 244
+ D G L D + PV++ DN+ +++WRNI+ L+ L +A L
Sbjct: 780 IMDTLGALALATEPPNDEMMKRPPVRRGDNFITRIMWRNILGQGLYQLLVLATL 833
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,314,899
Number of Sequences: 37544
Number of extensions: 536609
Number of successful extensions: 1349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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