Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F09
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.076
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)            31   0.94 
SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05)                  29   6.6  

>SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 35.1 bits (77), Expect = 0.076
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 340 FPWGDGQKSLFHNPHVN 390
           FPWGDG   LFHN H N
Sbjct: 2   FPWGDGDPPLFHNKHTN 18


>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
          Length = 284

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = +1

Query: 262 YLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHNPHVNALPSGYEDDH 420
           Y  H  E     P   Y Y R  T R P+ D +   +H P    +P      H
Sbjct: 174 YATHYAEQRPHDP-THYAYHRAYTGRIPYADHRGYRYHGPETRRMPQALHRPH 225


>SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05)
          Length = 226

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -2

Query: 450 NFLKQNYCNLVVIFITAGKGIHMRVVEKGLLSITPWETLCTNTHVFIRNKWRT--FMVFL 277
           NF K    +L++++I A     +  +E GL S TP    CT+       K+RT  F  FL
Sbjct: 129 NFTKAQK-SLLLLWIFAWMTFSVPFIEHGLRSTTPVTRSCTSMFTHGGYKFRTYYFPGFL 187

Query: 276 LVS*VGI 256
           LV+ + +
Sbjct: 188 LVTIISL 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,988,757
Number of Sequences: 59808
Number of extensions: 323587
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)