Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F08
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.14 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.24 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.74 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 28/113 (24%), Positives = 30/113 (26%)
 Frame = -2

Query: 583  PXXPXXXXPXPHPXXPPGGPXXPGXTPXPXXXXXXPPAAXGXAPXXXPXXPXXPXPXXXX 404
            P  P      P P    G P  P   P P       PA  G  P   P     P P    
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG-IPPVPKPSV 1099

Query: 403  NXKPQXKPPKXPPXPXXIQGXPXNXATPXYRXXAXXXQGNPQPRPQFXDSTPP 245
               P  KP    P      G P                G P P P+   + PP
Sbjct: 1100 AAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP-PVPKPSVAAPP 1151



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 23/88 (26%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
 Frame = -2

Query: 583  PXXPXXXXPXPHPXXPPGGPXXPGXT----PXPXXXXXXPPAAXGXA--PXXXPXXPXXP 422
            P  P      P    P G P  P  +    P P      PP     A  P   P     P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199

Query: 421  XPXXXXNXKPQXKPPKXPPXPXXIQGXP 338
             P       P   P   PP P    G P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 21/88 (23%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
 Frame = -2

Query: 583  PXXPXXXXPXPHPXXPPGGPXXPGXT------PXPXXXXXXPPAAXGXAPXXXPXXPXXP 422
            P  P      P    P G P  P  +      P P      P  +    P   P     P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180

Query: 421  XPXXXXNXKPQXKPPKXPPXPXXIQGXP 338
             P       P   P + PP P    G P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 27/86 (31%), Positives = 27/86 (31%)
 Frame = +3

Query: 360 GXGGXLGGXXWGXXFXXXXGXGXXGSXGXXXGAXPXAAGGXXXXXXGXGVXPGXXGPPGG 539
           G GG  GG   G       G G  G  G   G      GG      G G   G  G PGG
Sbjct: 192 GFGGGSGGPPPGPG--GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG---GFGGGPGG 246

Query: 540 XXGWGXGXXXXGXXGXXXXRXXXXGP 617
             G G G    G  G         GP
Sbjct: 247 FGG-GLGGFGGGPGGFGGGPGGHGGP 271


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 18/56 (32%), Positives = 18/56 (32%)
 Frame = -2

Query: 583 PXXPXXXXPXPHPXXPPGGPXXPGXTPXPXXXXXXPPAAXGXAPXXXPXXPXXPXP 416
           P  P    P   P  P G P  P   P P      PP   G  P   P  P  P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAP---PLPPSAPIAPPLPAGM-PAAPPLPPAAPAP 476


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
 Frame = -2

Query: 553 PHPXXPPGGPXXPGXTPX--PXXXXXXPPAAXGXAPXXXPXXPXXPXPXXXXNXKPQXKP 380
           P P  PP  P      P   P      PP A   AP   P     P      +  P   P
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP-----PSAPSLPSAVP-PMP 198

Query: 379 PKXPPXP 359
           PK PP P
Sbjct: 199 PKVPPPP 205



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 19/82 (23%), Positives = 23/82 (28%)
 Frame = -2

Query: 583 PXXPXXXXPXPHPXXPPGGPXXPGXTPXPXXXXXXPPAAXGXAPXXXPXXPXXPXPXXXX 404
           P  P    P P    PP  P  P  +P         P+A    P   P  P    P    
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL---PSAVPPMPPKVPPPPLSQAPVANT 214

Query: 403 NXKPQXKPPKXPPXPXXIQGXP 338
           + +P    P     P      P
Sbjct: 215 SSRPSSFAPPAGHAPNVTSESP 236


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 20/65 (30%), Positives = 20/65 (30%)
 Frame = -2

Query: 538 PPGGPXXPGXTPXPXXXXXXPPAAXGXAPXXXPXXPXXPXPXXXXNXKPQXKPPKXPPXP 359
           PP  P     TP P      PPA     P      P  P P       P   PP  PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGP------PPPPPPPGVAGAGP---PPPPPPPP 783

Query: 358 XXIQG 344
               G
Sbjct: 784 AVSAG 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,434
Number of Sequences: 5004
Number of extensions: 12852
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)