Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F05
         (944 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   4.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   4.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   6.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 474 GVSXHPRGPXXNTPPLDXNP 415
           G + H +GP    PP+   P
Sbjct: 195 GANMHQQGPPHQQPPIQQQP 214


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 474 GVSXHPRGPXXNTPPLDXNP 415
           G + H +GP    PP+   P
Sbjct: 197 GANMHQQGPPHQQPPIQQQP 216


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 594 PPPPPESGD 620
           PPPPPE  D
Sbjct: 214 PPPPPEEDD 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.142    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,039
Number of Sequences: 336
Number of extensions: 2000
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26582281
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)