Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F05
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.18 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.72 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 22/70 (31%), Positives = 23/70 (32%)
 Frame = +2

Query: 587 GGPPPXPGIXGXXXXGXXGGXPXXGXXPGXGPXPXXXPGGPXPPXGXXPPSXXXXXXWPX 766
           GGPPP PG  G    G  G     G   G G  P    GGP    G           +  
Sbjct: 198 GGPPPGPGGFG-GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGG 256

Query: 767 XPXGFXXXXG 796
            P GF    G
Sbjct: 257 GPGGFGGGPG 266



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 26/83 (31%), Positives = 26/83 (31%)
 Frame = -3

Query: 837 GXXXGGXXLGRGGAPXXXXXPXGXXGHXXXXXXEGGXXPXGGXGPPGXXXGXGPXPGXXP 658
           G   GG   G GG P       G  G        GG    GG GP G   G G   G  P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG-GPGGFEGGPGGF-GGGP 244

Query: 657 XXGXPPXXPXXXXPXIPGXGGGP 589
                        P   G GGGP
Sbjct: 245 GGFGGGLGGFGGGPG--GFGGGP 265


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 26/98 (26%), Positives = 26/98 (26%), Gaps = 1/98 (1%)
 Frame = +2

Query: 593 PPPXPGIXGXXXXGXXG-GXPXXGXXPGXGPXPXXXPGGPXPPXGXXPPSXXXXXXWPXX 769
           P P P I G         G       P     P   P  P       PPS       P  
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGA--PAA 446

Query: 770 PXGFXXXXGAPPLPRXXPPXXXPPXXGXXPXPGPXXXP 883
           P        APPLP   P     P     P P P   P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 23/99 (23%), Positives = 25/99 (25%), Gaps = 2/99 (2%)
 Frame = +2

Query: 593  PPPXPGIXGXXXXGXXGGXPXXGXXPGXGPXPXXXPGGPXPPXGXXPPSXXXXXXWPXXP 772
            P P P +         G  P         P P      P P      P        P  P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162

Query: 773  XGFXXXXGAPPLPRXXP--PXXXPPXXGXXPXPGPXXXP 883
                    APP+P      P    P  G  P P P   P
Sbjct: 1163 ---KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = -3

Query: 705  PPGXXXGXGPXPGXXPXXGXPPXXPXXXXPXIPGXGGGPP 586
            PP      G  P   P  G PP  P    P +P    G P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/46 (26%), Positives = 13/46 (28%)
 Frame = -3

Query: 723  PXGGXGPPGXXXGXGPXPGXXPXXGXPPXXPXXXXPXIPGXGGGPP 586
            P     PP         P   P    P   P    P +P   G PP
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.142    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,620
Number of Sequences: 5004
Number of extensions: 20634
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)