Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F05
         (944 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.57 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = -3

Query: 732 GXXPXGGXGPPGXXXGXGPXPGXXPXXGXPPXXPXXXXP 616
           G  P     P     G  P P   P  G PP  P    P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 794 GAPPLPRXXPPXXXPPXXGXXPXPGP 871
           G+PP P   PP   PP  G  P   P
Sbjct: 37  GSPPNPSQGPPPGGPP--GAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +2

Query: 587 GGPPPXPGIXGXXXXGXXGGXPXXGXXPGXGPXPXXXPGGP 709
           G P P P           G  P     P  GP P   PG P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPN----PSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = -3

Query: 723 PXGGXGPPGXXXGXGPXPGXXPXXGXPP 640
           P GG  PP       P P      G PP
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPP 431


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 594  PPPPPESG 617
            PPPPP SG
Sbjct: 1358 PPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.142    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,541
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)