Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F04
         (840 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    24   1.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.0  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   9.2  

>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/44 (20%), Positives = 24/44 (54%)
 Frame = -2

Query: 461 RCLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFG 330
           + +  G   ++  + + H F+ +  Y ++ A + Q+++  +TFG
Sbjct: 491 KTVSDGIRHYYVNVTFPHLFNGLVDYSLWKALIFQISNLQTTFG 534


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 567 C*IACTEKEGIQGCVARKRSNAGGQLQCVIPRALARVLRK 686
           C I    +   Q C  +K  + G + +CV+P     V RK
Sbjct: 230 CEIDMYMRRKCQECRLKKCLSVGMRPECVVPEVQCAVKRK 269


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 366 LSKEDDVRRYVVKRVLPAKEGKENAK 443
           L +E+D+ +  +KRV   KE   N K
Sbjct: 71  LDEENDINQGGLKRVSALKEKNPNLK 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,970
Number of Sequences: 336
Number of extensions: 2977
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)