Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F04
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   219   5e-58
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   218   7e-58
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   7.6  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  219 bits (534), Expect = 5e-58
 Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
 Frame = +3

Query: 42  DQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVR 221
           D +G E+ GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVR
Sbjct: 39  DSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVR 98

Query: 222 GCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 401
           GCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V+
Sbjct: 99  GCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVI 158

Query: 402 KR-VLPAKEGKENAKPRHKAPKIQRLVTP 485
           +R V+P KEGK   KP  KAPKIQRLVTP
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTP 184


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  218 bits (533), Expect = 7e-58
 Identities = 105/149 (70%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
 Frame = +3

Query: 42  DQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVR 221
           D +G E+ GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVR
Sbjct: 39  DSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVR 98

Query: 222 GCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 401
           GCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V+
Sbjct: 99  GCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVI 158

Query: 402 KR-VLPAKEGKENAKPRHKAPKIQRLVTP 485
           +R V+P KEGK   KP  KAPKIQRLVTP
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTP 184


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -2

Query: 440 SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNN 261
           S+ FS  G   A       +I + K E +   GSTFG   +G       R++   L H+N
Sbjct: 79  SVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDN 135

Query: 260 KSQD 249
             QD
Sbjct: 136 DIQD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,533
Number of Sequences: 5004
Number of extensions: 50796
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)