Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F04
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   194   7e-50
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   194   1e-49
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296...    29   3.5  
02_01_0295 - 1973115-1973404,1974138-1974663                           29   3.5  
02_05_0956 - 33064104-33066425                                         28   8.1  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  194 bits (473), Expect = 7e-50
 Identities = 99/153 (64%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
 Frame = +3

Query: 42  DQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKS 215
           D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKS
Sbjct: 39  DALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKS 98

Query: 216 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRY 395
           VRGCIV  +LSV+ LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNLSK+DDVR+Y
Sbjct: 99  VRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKY 158

Query: 396 V--VKRVLPAKEGKENAKPRHKAPKIQRLVTPV 488
           V   +R    K GK+ +    KAPKIQRLVTP+
Sbjct: 159 VNTYRRTFTTKNGKKVS----KAPKIQRLVTPL 187


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  194 bits (472), Expect = 1e-49
 Identities = 98/153 (64%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
 Frame = +3

Query: 42  DQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKS 215
           D LG+E+KGYV ++ GG DKQGFPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKS
Sbjct: 39  DALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKS 98

Query: 216 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRY 395
           VRGCIV  +LSV+ LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL+K+DDVR+Y
Sbjct: 99  VRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKY 158

Query: 396 V--VKRVLPAKEGKENAKPRHKAPKIQRLVTPV 488
           V   +R    K GK+ +    KAPKIQRLVTP+
Sbjct: 159 VNTYRRTFTTKNGKKVS----KAPKIQRLVTPL 187


>10_07_0139 +
           13327851-13327880,13327999-13329049,13329089-13329648,
           13329757-13329904,13330935-13331024,13331148-13331208,
           13331301-13331450,13331571-13331629,13332148-13332282,
           13333028-13333119,13333210-13333278
          Length = 814

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/53 (24%), Positives = 32/53 (60%)
 Frame = +3

Query: 321 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 479
           ++ PK+A    ++ + + +DD+ R V  + +P+++  + A+   ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377


>02_01_0295 - 1973115-1973404,1974138-1974663
          Length = 271

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +3

Query: 165 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 338
           G S  +  + G ++    RG +   + S  AL  +  GA   PG       +P R+G  +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224

Query: 339 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 428
            +KIRKL  +  ++D++  ++K  +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 422 LGWEHAFDDITTYIIFFAKV 363
           +G EHA DD++TYII  A V
Sbjct: 23  VGVEHATDDVSTYIIHVAHV 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,077,263
Number of Sequences: 37544
Number of extensions: 372975
Number of successful extensions: 986
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)