Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F04
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              252   3e-67
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   33   0.29 
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 30   2.7  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 30   2.7  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   4.7  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   6.2  
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  252 bits (617), Expect = 3e-67
 Identities = 116/147 (78%), Positives = 130/147 (88%)
 Frame = +3

Query: 48  LGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGC 227
           LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGC
Sbjct: 8   LGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGC 67

Query: 228 IVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 407
           IVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+YV++R
Sbjct: 68  IVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRR 127

Query: 408 VLPAKEGKENAKPRHKAPKIQRLVTPV 488
            LP KEGK   K + KAPKIQRLVTPV
Sbjct: 128 PLPEKEGK---KAKSKAPKIQRLVTPV 151


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 170 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFI 54
           V L  Q+ + A+  D L H +SL V+  SD + ++LP I
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLI 290


>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 385 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 474
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 385 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 474
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 216 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 356
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 306 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 404
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 354 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 473
           + F+++KEDD+  Y++   L  +  K NA   ++ P+  R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,472,066
Number of Sequences: 59808
Number of extensions: 417411
Number of successful extensions: 1278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)