Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F04
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   214   8e-56
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  214 bits (522), Expect = 8e-56
 Identities = 102/148 (68%), Positives = 119/148 (80%)
 Frame = +3

Query: 42  DQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVR 221
           D LGDEWKGYV+R+ GGNDKQGFPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVR
Sbjct: 39  DALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVR 98

Query: 222 GCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 401
           GCIVDAN+S L+LVIV+KG  EI GLTD  +PR+LGPKRASKIRKLFNL+K DDV +YV+
Sbjct: 99  GCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158

Query: 402 KRVLPAKEGKENAKPRHKAPKIQRLVTP 485
                  +G      +  APKIQRL+TP
Sbjct: 159 THDKTFPDG----VTKTIAPKIQRLITP 182


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 343 PKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 468
           PKS+  S   KK +   MS+    +  + +KM   D  HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,833,686
Number of Sequences: 27780
Number of extensions: 299209
Number of successful extensions: 751
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)