Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F01
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    77   3e-15
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    27   4.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.1  

>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 47/136 (34%), Positives = 69/136 (50%)
 Frame = +3

Query: 54  LHLGATLSXLKHHTVGXXPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFT 233
           + LG TLS  K  +    PE KG A+GN+  + C HNS     AR     +  V      
Sbjct: 99  IDLGTTLSEFKDFSKTLPPELKGEALGNSEHIRCCHNSF----ARSDPFISEEVRAATDE 154

Query: 234 GEAYHFVSLVPINGHLFELDGLKPYPMDHGPWAADEDWTDKFRRVMAERLGRDAGEQVHD 413
            E YHF++   IN   +ELDGL+  P++HG     E++ +K   V+  R+   A     +
Sbjct: 155 DEVYHFIAYTNINNVFYELDGLQAAPINHGS-CTKEEFAEKAVSVIQARI---ANYDPAE 210

Query: 414 IRFNLMAVVPDRRLAL 461
           IRFNLM +  D++ +L
Sbjct: 211 IRFNLMVICKDKKASL 226


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = -2

Query: 490 FISSAPSFCVNANLLSGTTAIRL--NLIS*TCSPASLPSLSAITLLNLSVQSSSAAHGP* 317
           F+S    +C+     + T  +R   NL++ +    S   LS     + +V +S++ H P 
Sbjct: 250 FLSGEQRYCLTTFEAALTFILRACPNLLTQSSIQPSDDPLSLEVANSETVSTSNSLHDPS 309

Query: 316 SIGYGLRPSSSNKCPLIGTKLTKWYAS 236
           +  Y +  SS +    +G  L K YAS
Sbjct: 310 AEPYPVNRSSLSNLRNLGLALEKSYAS 336


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/74 (20%), Positives = 34/74 (45%)
 Frame = +3

Query: 453 LALTQKLGALEINQKRVKEAISKIGKHLRHLLGKGREYNGQSELITSNDIDTSLNDSMVH 632
           L +T+KL   E + +++KE +S I   L       +   G+ E +    + ++   S + 
Sbjct: 211 LTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSLRGEQERLEKLLVSSNKTVSTLR 270

Query: 633 ISEETILTALQSSQ 674
            +E ++    ++ Q
Sbjct: 271 QTENSLRAECKTLQ 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,334
Number of Sequences: 5004
Number of extensions: 61747
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)