Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_F01
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 86 4e-17
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 72 7e-13
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 40 0.003
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 38 0.010
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 35 0.074
12_02_1118 + 26210322-26212559 30 2.8
01_07_0372 + 43134296-43134910 29 4.8
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 28 8.5
02_05_0655 + 30668706-30668849,30669043-30669471 28 8.5
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 85.8 bits (203), Expect = 4e-17
Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
Frame = +3
Query: 54 LHLGATLSXLKHHTVGXXPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFT 233
+ +G LS LK T P+ KG AI N+ + AHNS A P+ ++ A G+
Sbjct: 97 IDIGPELSNLKEFTGAFAPDMKGLAINNSDSIRTAHNSFARPEPFVSDEQRAA---GK-D 152
Query: 234 GEAYHFVSLVPINGHLFELDGLKPYPMDHGPWAA---DEDWTDKFRRVMAERLGRDAGEQ 404
E YHF+S +P G L+ELDGLK P+ G + D DW + V+ +R+ R +
Sbjct: 153 DEVYHFISYLPFEGVLYELDGLKEGPISLGQCSGGPDDLDWLRMVQPVIQKRIERYSQS- 211
Query: 405 VHDIRFNLMAVVPDRRLALTQKLGALEINQKRVKEAISK 521
+IRFNLMA++ +R+ T +L LE + ++ + +++
Sbjct: 212 --EIRFNLMAIIKNRKDVYTAELKELEKRRDQLLQEMNE 248
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 71.7 bits (168), Expect = 7e-13
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Frame = +3
Query: 51 GLHLGATLSXLKHHTVGXXPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRF 230
G+ L L LK P+ KG AI N+ + A NS A P+ + ++ + V
Sbjct: 149 GITLSEELKKLKEFAKDLPPDLKGLAIVNSESIRLASNSFARPEVPE--EQKSSVKDD-- 204
Query: 231 TGEAYHFVSLVPINGHLFELDGLKPYPMDHGP---WAADEDWTDKFRRVMAERLGRDAGE 401
+ YHF+S VP++G L+ELDGLK P+ G D W + V+ ER+ R +
Sbjct: 205 --DVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGVGDIGWLRMVQPVIQERIDRFS-- 260
Query: 402 QVHDIRFNLMAVVPDRRLALTQKLGALE 485
++IRF++MA++ +RR T +L L+
Sbjct: 261 -QNEIRFSVMAILKNRREKFTLELKELQ 287
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 39.9 bits (89), Expect = 0.003
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 246 HFVSLVPINGHLFELDGLKPYPMDHGP 326
H++ V +G L+ELDG+KP P++HGP
Sbjct: 288 HYICFVECDGTLYELDGMKPGPINHGP 314
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 37.9 bits (84), Expect = 0.010
Identities = 27/92 (29%), Positives = 45/92 (48%)
Frame = +3
Query: 162 NSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFELDGLKPYPMDHGPWAADE 341
++H++ + TD N V+ HFV ++G L+ELDG K P+ HGP + D
Sbjct: 259 DAHSVAASAGDTDANVEVNE--------HFVCFSCVDGELYELDGRKSQPICHGPSSPDT 310
Query: 342 DWTDKFRRVMAERLGRDAGEQVHDIRFNLMAV 437
D +V+ R+ + + FN+MA+
Sbjct: 311 LLQDA-AKVIKARIASNP----DSMNFNVMAL 337
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 35.1 bits (77), Expect = 0.074
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +3
Query: 234 GEAYHFVSLVPINGHLFELDGLKPYPMDHGPWAADEDWTDKFRRVMAERLGRDAGEQVHD 413
G H+V ++ +FELDG P+ HGP + D D +V+ R+ + G
Sbjct: 158 GVIEHYVCFSCVDDEIFELDGGNSQPISHGPSSPDSLLQDA-AKVIKARIAQYPG----S 212
Query: 414 IRFNLMAV 437
+ FN+MA+
Sbjct: 213 LNFNVMAL 220
>12_02_1118 + 26210322-26212559
Length = 745
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3
Query: 120 GWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSL 260
G A G LAC H + IP + + G GR A H V L
Sbjct: 386 GEADGELRVLACFHTNRNIPTLLNLVESSRGTGRGRLVMYAMHLVEL 432
>01_07_0372 + 43134296-43134910
Length = 204
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 489 NQKRVKEAISKIGKHLRHLLGKGREYNGQSELITSNDIDTSLNDSMV--HISEETILTAL 662
+ +V+ + ++ H + GK +++ + E +TS DID + V H++ ++LTA+
Sbjct: 119 SSSQVEVVVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAV 178
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/104 (19%), Positives = 44/104 (42%)
Frame = +3
Query: 462 TQKLGALEINQKRVKEAISKIGKHLRHLLGKGREYNGQSELITSNDIDTSLNDSMVHISE 641
T L +I + EA K+ K+L L + + + + + +D +N S++
Sbjct: 211 TDLLKKKKIEAAQATEAAQKLQKNLEELQDQNK--GNEIGRLQAEAVDAKMNISILEDKL 268
Query: 642 ETILTALQSSQLRTYDIDYTLPITIEIGAMDRPHQDXSILLVDP 773
+ +L+ ++ L + + P+T +I D ++ DP
Sbjct: 269 QEMLSLVKEKDLEIEQLKHGQPMTSQINKKDINQKNRKCRSQDP 312
>02_05_0655 + 30668706-30668849,30669043-30669471
Length = 190
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -2
Query: 430 IRLNLIS*TCSPASLPSLSAITLLNLSVQSSSAAHGP*SIGYGLRPSSSNKCPLIGT 260
+RL L+S CS LP+ +A T + + SS H + GLR S++ P G+
Sbjct: 59 LRLGLVS-PCSAPPLPTAAAYTPPHTNTPSSRRRHHAPLVRSGLRLLGSSRHPRRGS 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,401,029
Number of Sequences: 37544
Number of extensions: 381946
Number of successful extensions: 1018
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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