Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F01
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical pr...    77   1e-14
AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...    38   0.009
AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin c-t...    33   0.35 
AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin c-t...    31   1.4  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF024492-1|AAF98622.2|  314|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    29   5.7  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    29   5.7  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z92813-4|CAB07288.1|  469|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical
           protein C08B11.7 protein.
          Length = 321

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 3/160 (1%)
 Frame = +3

Query: 60  LGATLSXLKHHTVGXXPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGE 239
           LG  L+  K   +   P  +G  + N+ E+   HNS +  Q   + D   G S      +
Sbjct: 102 LGNILNQYKEFAIDLDPNTRGHCLSNSEEIRTVHNSFS-RQTLFELDIKGGESE-----D 155

Query: 240 AYHFVSLVPINGHLFELDGLKPYPMDHGPWAADEDWTDKFRRVMAERLGR-DAGEQVHDI 416
            YHFV+ VPI   ++ELDGL+  P++   +  ++DW +  + V+ +R+ +   GE    I
Sbjct: 156 NYHFVTYVPIGNKVYELDGLRELPLEVAEFQKEQDWIEAIKPVIQQRMQKYSEGE----I 211

Query: 417 RFNLMAVVPDRRLALTQKL-GALEINQ-KRVKEAISKIGK 530
            FNLMA+VP+R+  L + +   ++ N+   ++E I+ + K
Sbjct: 212 TFNLMALVPNRKQKLQEMMENLIQANENNELEEQIADLNK 251


>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = +3

Query: 240 AYHFVSLVPINGHLFELDGLKPYPMDHGPWAADEDWTDKFRRVMAERLGRDAGEQVHDIR 419
           AYHF++ V  NG LFE+D   P+P    P  A  D T   R   +  + +D  + V  + 
Sbjct: 164 AYHFITYVNKNGQLFEIDSCSPFPR---PLGATTDST-MIRDAFSTSI-KDLMDNVQKLS 218

Query: 420 FNLMAV 437
           F+ MA+
Sbjct: 219 FSAMAL 224


>AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 3 protein.
          Length = 227

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 243 YHFVSLVPINGHLFELDGLKPYPMDHG 323
           YHF++ V  NG L+E+D   P+P   G
Sbjct: 166 YHFITYVNKNGQLYEIDSCAPFPRPLG 192


>AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 1 protein.
          Length = 216

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 243 YHFVSLVPINGHLFELDGLKPYPMDHGP 326
           +HF+  V  NG L+E+D  +P+  + GP
Sbjct: 155 HHFICFVGKNGILYEIDSRRPFAREIGP 182


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +3

Query: 285 ELDGLKPYPMDHGPWAADEDWTDKFRRVMAERLGRDAGEQVHDIRF-NLMAVVPDRRLAL 461
           +LD LK       P A+D DWT+  R +  E  G    E V  I    L  V P++   +
Sbjct: 627 DLDRLKRVIALKKPSASDADWTEVLRLLAKE--GVVEPEVVRQIAITRLKWVEPEQNEEV 684

Query: 462 TQKLGALEINQKRVKEAISKIGKHLR 539
            +++   E+ QKR + A++++ ++++
Sbjct: 685 LKQVE--EVEQKRRRGAVARVKENVK 708


>AF024492-1|AAF98622.2|  314|Caenorhabditis elegans Hypothetical
           protein F14F9.5 protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +3

Query: 141 PELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFELDGLKPYPMDH 320
           P+ A       IP     T    GV     TG   HF SL     HL        Y   +
Sbjct: 91  PDTAILTRHVLIPNTNLSTSGAVGVKIMLRTGFMIHFWSL-----HL-------DYT-SY 137

Query: 321 GPWAADEDWTDKFRRVMA-ERLGRDAGEQVHDI 416
           GP+AA+    DK  ++MA E +GR  G Q+++I
Sbjct: 138 GPYAANNKLVDKLDQIMAGENVGR--GPQIYEI 168


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 108 PENKGWAIGNTPELACAHNSHAIP-QARKKTDKNAGVSTGRFTGEAYHFV 254
           PE+ G +IGNT +   A+   ++P Q+ + TD   G + G      +H V
Sbjct: 21  PEDDGVSIGNTQDSQFAYEQFSVPTQSSQATDLLPGGTDGTTNDLPFHDV 70


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 108 PENKGWAIGNTPELACAHNSHAIP-QARKKTDKNAGVSTGRFTGEAYHFV 254
           PE+ G +IGNT +   A+   ++P Q+ + TD   G + G      +H V
Sbjct: 21  PEDDGVSIGNTQDSQFAYEQFSVPTQSSQATDLLPGGTDGTTNDLPFHDV 70


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +3

Query: 486 INQKRVKEAISKIGKHLRHLLGKGREYNGQSELITSN-DIDTSLNDSMVHISEETILTAL 662
           I  + V +   ++GK  +H + K  EY+G+   + ++ ++ + L   +V +S  T   A 
Sbjct: 682 ITPETVFDISPELGKSKQHCIDKQAEYSGKLVHLKNHIEVASVLESILVEVSNNTDSNAT 741

Query: 663 QSS--QLRTYDIDYTLPITIEI 722
            +S      +D+   L + IEI
Sbjct: 742 LNSATSQEIFDVVELLQVPIEI 763


>Z92813-4|CAB07288.1|  469|Caenorhabditis elegans Hypothetical
           protein T28A8.4 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 420 FNLMAVVPDRRLALTQKLGALEINQ-KRVKEAISKIGK 530
           F L A VPD  LAL +  G +++++ KR+ + +S  G+
Sbjct: 73  FALSATVPDSFLALIRFTGTVQLDERKRINKYVSNDGR 110


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 25/80 (31%), Positives = 41/80 (51%)
 Frame = +3

Query: 333 ADEDWTDKFRRVMAERLGRDAGEQVHDIRFNLMAVVPDRRLALTQKLGALEINQKRVKEA 512
           AD+   D F+++     G+ A E +H     +MAVV +  +  TQ+L    IN K V+  
Sbjct: 141 ADDAMWDHFKKMY----GKAAEENMHTF---IMAVVNNIDVLYTQRLLQPRINIKIVR-- 191

Query: 513 ISKIGKHLRHLLGKGREYNG 572
             +I K++ HL+   +  NG
Sbjct: 192 -YEILKNIPHLMNARKHSNG 210


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 336 DEDWTDKFRRVMAERLGR-DAGEQVHDIRFNLMAVVPDRRLALTQKLGALEINQKRVKEA 512
           ++  TD   R +  + G  D  +++H      +  + D  LAL +++  LE  +K++ + 
Sbjct: 500 EDQITDLDERGLTLQTGNVDELKEMHVRLQEELISIEDMELALNEEIDNLETEEKKIDQE 559

Query: 513 ISKIGKHL 536
           ++ +GK++
Sbjct: 560 LAGVGKNV 567


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,102,446
Number of Sequences: 27780
Number of extensions: 352199
Number of successful extensions: 799
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)