Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_F01
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.52 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 579 HSDRCILCLSPTNAV 535
           HSD C LCL   NAV
Sbjct: 351 HSDSCCLCLDSMNAV 365


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 488 KSEESQRSYFKNRQTSTAFVGERQRIQRSE 577
           KS +++R Y K R+TS     +R+  +RS+
Sbjct: 281 KSYKNEREYRKYRETSKERFRDRRERERSK 310


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 795 HNSSLFXQDPLIKYXYPDE 739
           H+  L+ Q P + Y  PDE
Sbjct: 78  HHQVLYQQSPYLMYENPDE 96


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 272 INWYQANKMVCFTCKSASRNSSIF 201
           IN     +++CF CK  +  S+++
Sbjct: 15  INVLLHGQVICFVCKDITSTSALY 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,149
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)