Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E23
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.92 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 116 PINLSNNLRASLYSQLFSKINLKDQ--ILRIP 27
           P  L+ N +  L+S+LF+K   KD+  IL +P
Sbjct: 679 PSTLTKNSKQGLFSKLFAKKVKKDKDIILNVP 710


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 396 FLQLHSRHHLLRFSRSPFVIRVQXGSVVVNEKHRTNTNSL*RF 268
           F  L +R    R +R P +  ++ GS++ N  H  +  S+ RF
Sbjct: 367 FKALRNRARKARANRKPNLGDIKPGSIIENIAHTRSGYSVARF 409


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 423 IKELTDAMNKEILTLQEYADAMKSQSSK 506
           +  L D  N+  LTLQE ADA K    K
Sbjct: 379 VDRLMDETNQ--LTLQETADAFKDLQDK 404


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 411 DSEYIKELTDAMNKE 455
           DS+YI+E T++ +KE
Sbjct: 685 DSQYIREQTESDDKE 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,807
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)