Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E20
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   2.7  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   4.7  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   8.1  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 133 DYQSNLLIMSNDYGFNSDDSP---NKTNSHLQLPSPIITRRNRTASTSE 270
           D+ S L   S+++   +  SP    KTN   +LPS +  +  RT   S+
Sbjct: 552 DHHSPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSK 600


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 431 ISTLPNPT*VRKISSCPCAHN-----SSHSGETRQVGRTTSVTIKNPRYVT 568
           I+T+ NP  V  ISS P  H      ++H+G T   GR T     N  Y+T
Sbjct: 68  IATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTN--YIT 116


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 89  LNKFFSYLPTTYFRMIINLIF*SCPTITVLIVMIPPIKQTRI 214
           +NKF S+     F + +  +     T+TVLIV + P+   ++
Sbjct: 17  INKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPVLPVYTNKV 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,577
Number of Sequences: 5004
Number of extensions: 59805
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)