Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E20
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    32   0.62 
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    32   0.62 
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       32   0.62 
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       32   0.62 
U28991-10|AAK68306.2|  487|Caenorhabditis elegans Hypothetical p...    31   1.1  
U28991-9|AAU05576.1|  484|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U52003-1|AAG00054.1|  503|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 287 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 391
           P   G  K F   KG+GFV  +  GED+F+H S++
Sbjct: 20  PRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 54


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 287 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 391
           P   G  K F   KG+GFV  +  GED+F+H S++
Sbjct: 51  PRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 287 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 391
           P   G  K F   KG+GFV  +  GED+F+H S++
Sbjct: 51  PRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 287 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 391
           P   G  K F   KG+GFV  +  GED+F+H S++
Sbjct: 51  PRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85


>U28991-10|AAK68306.2|  487|Caenorhabditis elegans Hypothetical
           protein F08F8.10a protein.
          Length = 487

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 420 HQXRGTYSPSISDIWRNISSPPFSGFTNP 334
           HQ   TYSP +    ++ISS P +GFTNP
Sbjct: 239 HQQSSTYSPIV----QSISSQPTAGFTNP 263


>U28991-9|AAU05576.1|  484|Caenorhabditis elegans Hypothetical
           protein F08F8.10b protein.
          Length = 484

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 420 HQXRGTYSPSISDIWRNISSPPFSGFTNP 334
           HQ   TYSP +    ++ISS P +GFTNP
Sbjct: 236 HQQSSTYSPIV----QSISSQPTAGFTNP 260


>Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical
           protein C27A7.2 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 557 RYVTFFVLMQGLLPSNYPSYLINLN 631
           +Y+ FF L   L P NYP+YL   N
Sbjct: 206 KYIAFFDLDDILFPLNYPTYLEEFN 230


>U52003-1|AAG00054.1|  503|Caenorhabditis elegans Hypothetical
           protein ZK381.2 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 560 YVTFFVLMQGLLPSNYPSYLINLN 631
           Y+ FF +   L P NYP+YL   N
Sbjct: 258 YIAFFDMDDILFPKNYPTYLEEFN 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,681,230
Number of Sequences: 27780
Number of extensions: 330166
Number of successful extensions: 762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)