Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E19
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    69   9e-13
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    56   7e-09
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    55   2e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    53   6e-08
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    44   4e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    41   2e-04
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    33   0.054
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    30   0.38 
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.67 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   6.2  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.2  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    26   8.2  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    26   8.2  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   8.2  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 31/75 (41%), Positives = 43/75 (57%)
 Frame = +2

Query: 221 DKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFV 400
           DKLVV+DF ATWCGPCK I PK ++  +                   A+E  +++MP+F 
Sbjct: 18  DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFF 76

Query: 401 FVKNGKKLDEFSGAN 445
             KNG+K++E  GAN
Sbjct: 77  LYKNGEKIEEIVGAN 91


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 230 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 406
           + +D  A WCGPCK I P   ++A++                   AS   + +MPTFVF 
Sbjct: 22  LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81

Query: 407 KNGKKLDEFSGAN 445
           +NGK++D  +GAN
Sbjct: 82  ENGKQIDMLTGAN 94


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 25/78 (32%), Positives = 41/78 (52%)
 Frame = +2

Query: 215 AGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPT 394
           + DK+ V+DF A WCGPCK + P L+++ +E                  A +  + ++PT
Sbjct: 33  SADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFSDIAQKNGVYALPT 91

Query: 395 FVFVKNGKKLDEFSGANV 448
            V  + G++LD   GA+V
Sbjct: 92  MVLFRKGQELDRIVGADV 109


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +2

Query: 173 TSKIPTNLKTRLAE--AGDKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXX 343
           ++++P   K  L E    DK++++ F A WCG CK + P+ +  A E+            
Sbjct: 21  SAEVPKVNKEGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDC 80

Query: 344 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSG 439
                  SEY+I   PT    KNGK++ ++SG
Sbjct: 81  TEEGDLCSEYSIRGYPTLNVFKNGKQISQYSG 112



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 224 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 403
           K V+++F A WCG CK + P  +++A E                   S  +I+  PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432

Query: 404 VKNGKKLD 427
            K   K++
Sbjct: 433 FKANDKVN 440


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 20/80 (25%), Positives = 36/80 (45%)
 Frame = +2

Query: 206 LAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINS 385
           L    +++++++F A W  PCK +    D+ A +                  A  +++N+
Sbjct: 15  LQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEAEKFSDIAESFDVNA 73

Query: 386 MPTFVFVKNGKKLDEFSGAN 445
           +P FV +   K L   SGAN
Sbjct: 74  VPLFVLIHGAKVLARISGAN 93


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 215 AGDKLVVIDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXXXXXXXXASEYNINSM 388
           A  K  +I+F ATWCG CK + P  +E+ A  E                  A +Y+I   
Sbjct: 37  ASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGF 96

Query: 389 PTFV-FVKNGKKLDEFSGA 442
           PT + F  +G +  ++S A
Sbjct: 97  PTLIWFPPDGSEPVQYSNA 115



 Score = 30.3 bits (65), Expect = 0.38
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 224 KLVVIDFMATWCGPCKMIGPKLDEI 298
           K V+++F A WCG CK + P  + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 4/118 (3%)
 Frame = +2

Query: 104 FLFAF*TVNIIFSFN--LSAQECPFTSKIPTNLKTRLAEAGDKLVVIDFMATWCGPCKMI 277
           FL  F  V+ +F ++    +      SK   N +  +   G  LVV  F A WCG CK +
Sbjct: 12  FLACFSLVSGVFGYSPMFGSNTIELNSK---NFRKFVKAKGPSLVV--FYAPWCGYCKKL 66

Query: 278 GPKLDEIAAEMXXXXXXXXXXXXXXXXXA--SEYNINSMPTFVFVKNGKKLDEFSGAN 445
            P   ++A+ +                 A  S+Y +   PT   V    K    S  +
Sbjct: 67  VPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTD 124


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -3

Query: 564 LLKTYTCFFFLIPFSFHRRLRTTLVSIYLCLRIVVL---SLSTLAPENSSSFLPFLT 403
           L KTYT +FF+   SF R ++  L+    C   + L      T+   +     PF+T
Sbjct: 30  LYKTYTSYFFMSSKSFVRGVKRYLIYFCYCANFIALFRVIFGTIFVYSPDGITPFMT 86


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +2

Query: 257 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLD 427
           CG CK +GP  D   E A E                  +S  NI ++PT    +NG+ ++
Sbjct: 54  CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113

Query: 428 E 430
           E
Sbjct: 114 E 114


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 588 TLKTFFXHLLKTYTCFFFLIPF 523
           +L  +F  L++ + CFFF+ P+
Sbjct: 56  SLSFWFLSLVRGFVCFFFMFPY 77


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 546 CFFFLIPFSFHRRLRTTLVSIYLC 475
           CF  L  +SF + L+T  + IY+C
Sbjct: 77  CFLTLATWSFMKLLKTLRIVIYIC 100


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 273 ILHGPHQVAMKSITTSLSPASASLVFRFVGIFDV 172
           +L+G + V +K   T  S  S  L F  VG+FD+
Sbjct: 203 LLYGCYSVMVKFHITEESCVSTRLFFGLVGLFDL 236


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 238 DHDELVSGFRQPCLQVRRNL*CEWTFLGR*IETKNNIHS 122
           +H++ V+ F++  LQ+ RN    WT +G       N H+
Sbjct: 353 EHEKAVTYFKR-ALQLNRNYLSAWTLMGHEYVELKNTHA 390


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 178 KDSDEPEDKAGGSRR-QARRDR 240
           ++ +E ED++GG RR +AR DR
Sbjct: 121 EEDEEDEDESGGGRRKRARHDR 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,753
Number of Sequences: 5004
Number of extensions: 43730
Number of successful extensions: 129
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)