Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E16
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    99   9e-22
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   1.5  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   2.0  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.6  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.1  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   8.1  

>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 98.7 bits (235), Expect = 9e-22
 Identities = 58/204 (28%), Positives = 113/204 (55%), Gaps = 17/204 (8%)
 Frame = +2

Query: 224 KSGEYIARYAKHVQIHEEGLDKAC---KEILTSMSTSKLEIPDAGTGIHPNVEHPRAVDW 394
           +  E+I+  +  V++++ G        KE L S+     E  +    +HP       +DW
Sbjct: 6   QDAEFISLNSNDVKVNKGGCAAVATWIKEKLDSLGPQFAEWQNHE--LHPKTRDVSTLDW 63

Query: 395 VFVADTLNFCFWSY-----SG--ARKWTVGG----HSGYYALEAALDRAIKEGYDITNPE 541
           +F+ D LNF FWS      SG  ++++++      ++GY++L AA+++A+  G  IT+P 
Sbjct: 64  IFLVDILNFSFWSDVDVEDSGKHSKRFSIEYKGKLYTGYWSLCAAINKALDAGIPITSPA 123

Query: 542 YYS---KITTEQLEMIMRGDNEAKIPLFKERISVLHETGAILLEKYNGTFTTCLKEANKS 712
           +Y+   +     +  +       KIPL +ERI ++  +G +L++ Y+G++   LK+ +  
Sbjct: 124 FYADEKQCPDTLIASVFDSATVEKIPLLEERIRIMRASGRVLVDSYHGSYCGLLKKCHNQ 183

Query: 713 ALKLLEIIVNNFPSFRDEAVYKGQ 784
           A +L+++++ +FP FRD +VYKG+
Sbjct: 184 AQRLIKLLLADFPDFRDVSVYKGR 207


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 351 VPASGISSLLVDIDVSISLHALSNPSSCICTCLAYLAIYSPDFAGSNTPL 202
           V    IS    D+ +S++ H L +  SC  T L Y     PDF G  TP+
Sbjct: 680 VYVKNISPFTQDV-LSLNPHFLFSNGSCN-TSLCYYESTDPDFGGLKTPM 727


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +2

Query: 434  YSGARKWTVGGHSGYYALEAALDRAIKEGYDITNPEYYSKITT--EQLEMIMRGDNEAKI 607
            +SG   WT G    + A E ++ R++++  D     Y  K++T  +Q  +I+  +NE  +
Sbjct: 1225 FSGMPNWTYGADKLHVAAEISVMRSLRDKLDSFLLRYPLKVSTTLKQKLLIILLNNEMYM 1284

Query: 608  PLFKERISVLHETGAILLE 664
             L+     VLH     ++E
Sbjct: 1285 -LYTWLTPVLHGRNVRMVE 1302


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 563 EQLEMIMRGDNEAKIPLFKERISVLHETGAILLEKYN 673
           E+ E  +R +NE  I LFKE +  L +    L E+YN
Sbjct: 581 EKFEKTIR-ENEESISLFKEEVEKLTDEITQLSERYN 616


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 132 NCTRVIYSYDIHIK*SRNNKN 70
           NC RVI  +D H+K +R++ N
Sbjct: 636 NCARVIRLFDAHLKGARSDGN 656


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 375 CSTLGCIPVPASGISSLLVDID 310
           C T G +PVP S +   L D+D
Sbjct: 447 CETCGAVPVPESELPVKLPDLD 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,527,308
Number of Sequences: 5004
Number of extensions: 75047
Number of successful extensions: 230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)