Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_E16
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1096 + 23931862-23931931,23932406-23932549,23932888-239329... 79 3e-15
07_03_0414 + 17892133-17893590 31 1.2
02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579 31 1.6
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965... 30 2.8
07_03_0425 - 18070607-18070712,18071771-18072744 29 3.7
03_05_0518 + 25120610-25120733,25121434-25121978 29 6.4
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207... 25 7.6
01_07_0195 + 41907183-41907306,41907427-41907974 28 8.5
>07_03_1096 +
23931862-23931931,23932406-23932549,23932888-23932986,
23933422-23933498,23933813-23933921,23934973-23935301,
23935838-23935930
Length = 306
Score = 79.4 bits (187), Expect = 3e-15
Identities = 51/185 (27%), Positives = 86/185 (46%)
Frame = +2
Query: 227 SGEYIARYAKHVQIHEEGLDKACKEILTSMSTSKLEIPDAGTGIHPNVEHPRAVDWVFVA 406
S ++A + HV++ ++K +I ++ + + GIH + P V ++FV
Sbjct: 7 SAAWVASRSSHVKVDMLEVEKVVDKIQGNVPKVEWDFE----GIHYFDDGPLTVQYLFVL 62
Query: 407 DTLNFCFWSYSGARKWTVGGHSGYYALEAALDRAIKEGYDITNPEYYSKITTEQLEMIMR 586
D LNFCFW Y L + L A+++ + + T QL ++
Sbjct: 63 DALNFCFWPDKDL---------SYDHLASGLKLALEKDKTALDADRLQSYTGPQLRQLLN 113
Query: 587 GDNEAKIPLFKERISVLHETGAILLEKYNGTFTTCLKEANKSALKLLEIIVNNFPSFRDE 766
+P+ +ER+ +LHE G L + G +K A SA L+E+I +FP FRD
Sbjct: 114 WPRP--LPIEEERVRLLHEVGMELERSFGGEAANLVKSAGNSAATLIELITRHFPGFRDH 171
Query: 767 AVYKG 781
++YKG
Sbjct: 172 SLYKG 176
>07_03_0414 + 17892133-17893590
Length = 485
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -2
Query: 390 STALGCSTLGCIPVP---ASGISSLLVDIDVSISLHALSNPSSCICTCLAYLAI 238
S LG +T G PV A GI S VD+ + + AL+ + C+ LAYL++
Sbjct: 101 SLLLGDATGGFPPVTCVVADGIMSFAVDVAEELGIPALAFRTDSACSFLAYLSL 154
>02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579
Length = 339
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +2
Query: 347 GTGIHPNVEHPRAVDWVFVADTLNFCFWSYSGARKWTVGGHSGYYALEAALDRAIKEGYD 526
G G+HP H + +VF D + ++ W VG H+ ++ + + +
Sbjct: 237 GGGMHPMAGHFISEHYVFNPDQETYSYYGPLNLMTWHVGYHNEHHDFPRIPGTRLYKVRE 296
Query: 527 ITNPEYYSKI 556
I PEYY+ +
Sbjct: 297 IA-PEYYNNL 305
>02_02_0392 -
9649858-9650405,9650499-9650670,9650788-9650926,
9651113-9651334,9651422-9651495,9653042-9653661,
9653810-9653965,9655250-9655347,9655443-9655534,
9655891-9655977
Length = 735
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 452 WTVGGHSGYYALEAALDRAIKEGYDI 529
W VGG+ G A+ AA+D AI +G D+
Sbjct: 256 WGVGGNFGDAAVLAAVDDAINDGVDV 281
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = -2
Query: 411 VSATNTQSTALGCSTLGCIPVPASGISSLLVDIDVSISLHALSNPSSCICTCLAYLAI 238
V A + ST + + C V A GI L +DI I + AL + C+ LAYL+I
Sbjct: 108 VRAGDDGSTGVQFPPVTC--VVADGIMPLAIDIAEEIGVPALGFRTVSACSFLAYLSI 163
>03_05_0518 + 25120610-25120733,25121434-25121978
Length = 222
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 305 LTSMSTSKLEIPDAGTGIHPNVEHPRAVDWVFVAD-TLNFCF 427
L +M S I A G+ P HPRA + +FVA+ TL+ F
Sbjct: 91 LNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGF 132
>06_03_0629 +
22920206-22920291,22920430-22920527,22920657-22920796,
22921596-22921626,22922025-22922128,22922439-22922560,
22922651-22923050,22923245-22923268
Length = 334
Score = 24.6 bits (51), Expect(2) = 7.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 447 RAPLYDQKQKFNVSATNTQSTALGCSTLGCIPVPA 343
RAPL ++ + VS TNT A+G L I PA
Sbjct: 76 RAPL---RKYWGVSITNTVGPAMGIEALKFISYPA 107
Score = 22.2 bits (45), Expect(2) = 7.6
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -2
Query: 360 CIPVPASGISSLLVDIDVSISLHALSNPSSCICTCLAYLAIYSPDFAGSNTPLL 199
C + A G+SS + S ++ L+NP++ + L +L + + S L+
Sbjct: 138 CTFLVAGGVSSFALLKTSSKTIKKLANPNAPLGYTLCFLNLAFDGYTNSTQDLI 191
>01_07_0195 + 41907183-41907306,41907427-41907974
Length = 223
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 305 LTSMSTSKLEIPDAGTGIHPNVEHPRAVDWVFVAD 409
L +M S I A G++P HPRA + +FV +
Sbjct: 91 LNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVE 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,901,000
Number of Sequences: 37544
Number of extensions: 453334
Number of successful extensions: 1291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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