Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_E15
(1135 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.90
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 6.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.4
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.90
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +2
Query: 530 PXXXPGXPXXRSPXCPTLAPPXXXPXPPPXLXXAXLSSXLRXXXXPXPXXPAPASXP 700
P P P +P P+ APP PPP A + S P P P P
Sbjct: 147 PSIPPPSPAS-APPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +1
Query: 520 PXRPRXXARXPXXXKPPXPHXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXP 681
P RP+ A P P P PP PPPPS + +P P + P
Sbjct: 1691 PVRPQSAA--PPQMSAPTP-PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 PXXXKPPXP-HXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRP 687
P PP P H P PPPP G P P P P
Sbjct: 203 PGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 PXXXKPPXP-HXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRP 687
P PP P H P PPPP G P P P P
Sbjct: 216 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 PXXXKPPXP-HXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRP 687
P PP P H P PPPP G P P P P
Sbjct: 229 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 PXXXKPPXP-HXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRP 687
P PP P H P PPPP G P P P P
Sbjct: 242 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 PXXXKPPXP-HXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRP 687
P PP P H P PPPP G P P P P
Sbjct: 255 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 PXXXKPPXP-HXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRP 687
P PP P H P PPPP G P P P P
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 PXXXKPPXP-HXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRP 687
P PP P H P PPPP G P P P P
Sbjct: 281 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 PXXXKPPXP-HXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRP 687
P PP P H P PPPP G P P P P
Sbjct: 294 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 530 PXXXPGXPXXRSPX-CPTLAPPXXXPXPPP 616
P P P R P P+L+ P P PPP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 565 PPXPHXXPPXXXPPPP 612
PP P PP PPPP
Sbjct: 13 PPPPGFEPPSQPPPPP 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,637
Number of Sequences: 5004
Number of extensions: 15871
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 603631146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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