Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E15
         (1135 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    30   2.6  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    30   2.6  
CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical pr...    29   8.0  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   8.0  

>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +2

Query: 563 SPXCPTLAPPXXXPXPPPXLXXAXLSSXLRXXXXPXPXXPAPASXP 700
           SP C    PP   P PPP        S +     P P  PA    P
Sbjct: 77  SPSCCPYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCP 122



 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = +2

Query: 545 GXPXXRSPXCPTLAPPXXXPXPPPXLXXAXLSSXLRXXXXPXPXXPAPASXP 700
           G P      CP + P    P PPP       S        P P   AP   P
Sbjct: 72  GAPRPSPSCCPYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPP 123


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
 Frame = +1

Query: 520 PXRPRXXARXPXXXKPPX-PHXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRPGLL 696
           P RP   A  P    P   PH  PP   PPPP    +      +P    P      P + 
Sbjct: 588 PSRPLPQA--PNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVG 645

Query: 697 AG 702
           AG
Sbjct: 646 AG 647


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
 Frame = +1

Query: 520 PXRPRXXARXPXXXKPPX-PHXXPPXXXPPPPSXXXLGXXXXXSPXXTXPXAXXPRPGLL 696
           P RP   A  P    P   PH  PP   PPPP    +      +P    P      P + 
Sbjct: 414 PSRPLPQA--PNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVG 471

Query: 697 AG 702
           AG
Sbjct: 472 AG 473


>CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical
            protein C52D10.13 protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 20/68 (29%), Positives = 21/68 (30%)
 Frame = +3

Query: 813  VXPPXPXXXXPPXGASXAXXRAXPDPTPXCADXXXPPGPXPVXGXWXLLRXPGXXXXXRX 992
            V PP P     P G S A     P   P       P GP    G    L  PG     R 
Sbjct: 142  VGPPGPPGPKGPDGESGAPGEPGPAGRPGNKGAPGPAGPVGADGEPGELGAPGAPGVQRT 201

Query: 993  XHARXGAP 1016
              +  G P
Sbjct: 202  VASPVGEP 209


>Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical
           protein R06C1.3 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +2

Query: 575 PTLAPPXXXPXPPPXLXXAXLSSXLRXXXXPXPXXPAPASXPG 703
           P+ APP   P PPP      +SS       P P   A     G
Sbjct: 349 PSAAPPTNIPPPPPPPPPMVISSAAASFAAPAPKPSADGEAAG 391


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 520 PXRPRXXARXPXXXKPPXPHXXPPXXXPPPP 612
           P  P      P    PP P   PP   PPPP
Sbjct: 49  PICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,303,128
Number of Sequences: 27780
Number of extensions: 181696
Number of successful extensions: 1076
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3067730652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)