Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E14
         (993 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -3

Query: 442  PXTPPPSXRXXXXSPXXGXPXXPYPXXXXXPWVPXXS 332
            P  PPPS      +P  G P  P P     P VP  S
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP-VPAPS 1243



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/68 (23%), Positives = 16/68 (23%)
 Frame = +3

Query: 708  PXXQXGPXKXKXXXXPXXXXVPXXGXPPXXXXXXXXXXXPPXPXXPPPPXXXXXXXXXXP 887
            P     P   K          P  G PP           PP    PP P          P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212

Query: 888  PXKXTPPP 911
            P    P P
Sbjct: 1213 PSTAPPVP 1220



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 19/71 (26%), Positives = 19/71 (26%)
 Frame = -1

Query: 552  APVXXAPGXXAXGXXXXXSXXXXXPXPXXXXRPXXEPPXPPPXPXAXXGXHQXXXPPXTP 373
            AP    P   A       S     P P     P   P   PP P    G      PP T 
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV-PPVPPPSTA 1216

Query: 372  TXXPXXXXGSP 340
               P    G P
Sbjct: 1217 PPVPTPSAGLP 1227


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -1

Query: 480 PXPXXXXRPXXEPPXPPPXPXAXXGXHQXXXPPXTP 373
           P P     P    P PPP P    G      PP  P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
 Frame = +3

Query: 825 PPXPXX--PPPPXXXXXXXXXXPPXKXTPPP 911
           PP P    PPPP          PP    PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 22/73 (30%), Positives = 22/73 (30%)
 Frame = -1

Query: 921 GXXXGXXXFXGGGXXXXXXXXXPGGGVXGXEGGXXXXXXXXXGXGXPPXXXPXXGGXXXP 742
           G   G   F G G          GGG  G EGG         G G         G    P
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGF-GGGPGGFEGGPGGFGGGPGGFGGG-----LGGFGGGP 258

Query: 741 XXFXGAPXGXXGP 703
             F G P G  GP
Sbjct: 259 GGFGGGPGGHGGP 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,608
Number of Sequences: 5004
Number of extensions: 16725
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)