Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_E11
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 277 2e-75
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.094
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 29 1.2
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 28 2.0
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 6.1
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 26 6.1
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 26 6.1
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 26 6.1
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 6.1
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 8.1
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 8.1
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 277 bits (679), Expect = 2e-75
Identities = 126/196 (64%), Positives = 159/196 (81%)
Frame = +1
Query: 205 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 384
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 385 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 564
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 565 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 744
MFGYATDET E +PLT++LAHKLN ++ RR+G W RPD+KTQVT EY GA +P
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIP 184
Query: 745 QRVIL*SLSLQHSEKI 792
+RV +S QH++ I
Sbjct: 185 RRVDTIVVSAQHADSI 200
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 800 DLRDEIREKVIKEVIPXTL 856
DLR EI EK+IK +P L
Sbjct: 204 DLRSEILEKIIKPTVPAHL 222
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 32.3 bits (70), Expect = 0.094
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 5/214 (2%)
Frame = -3
Query: 815 SHLASL*XIFSECCSDNDYSMTLCGTVAPPANTYSQV----TCVFES-GLAHQNSPFRLS 651
S L S FS S+ S T ++ P++ S + T V S + +S L+
Sbjct: 112 SQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLT 171
Query: 650 SAIF*LSLCASTTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASI 471
S+ F SL +ST+ + SVSS + +P TSSS+L S + + SS+S
Sbjct: 172 SSTF-SSLSSSTSSS--QPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSS 228
Query: 470 TLHVL*SKPLDESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*F 291
TL S L SS P + S +T S + S S+ ++S ++ +S S
Sbjct: 229 TLT---SSSLSTSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT 284
Query: 290 RCASRIASLIWSHILSG*PSPTDSDVNKNTDPSS 189
+S I+S S S P+ T S ++ ++ SS
Sbjct: 285 STSSTISS---SSSSSSSPTSTSSTISSSSSSSS 315
Score = 27.9 bits (59), Expect = 2.0
Identities = 22/104 (21%), Positives = 49/104 (47%)
Frame = -3
Query: 785 SECCSDNDYSMTLCGTVAPPANTYSQVTCVFESGLAHQNSPFRLSSAIF*LSLCASTTVN 606
S S + S ++ + + +++ + + S + +SP SS I +S++ +
Sbjct: 260 SSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTIS----SSSSSSS 315
Query: 605 GMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSAS 474
S++SS + + +S +PTSSS S + ++ +SS +
Sbjct: 316 SFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTT 359
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 753 DSLWDCCTTSKYIFASNLCF*IWSCPPK--FSISPELCNFL 637
DSL D TT ++IF+ NL +W P +I P+ N L
Sbjct: 246 DSLSDSMTTPEFIFSHNLVLQLWKYAPTTLLNIIPQFENEL 286
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +1
Query: 109 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDA 285
W + K M S T S+D E S+F S+SV E CD+ SD L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692
Query: 286 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 384
K E L+ G+ TS+ ++
Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 255 RPNKRRYSRRAPESGSGRKSCM 320
+P KR+Y+R+AP S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 16 SXTIXGILKDFDEMDLFSTVLIQXDCLGLY*WANS-----KFRMPETSKMNGYAKTNGHS 180
S GI+K DE++ F+ VL+ W S + + E K+ G + H
Sbjct: 120 SDVTFGIIKKSDEVESFTIVLVSSKYNPKNYWNGSWRCICNYNVSE-KKLEGRSHIRVHY 178
Query: 181 YDMEDGSVFLFTSESV 228
Y EDG+V+L S +
Sbjct: 179 Y--EDGNVWLDASRPI 192
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 698 VFESGLAHQ--NSPFRLSSAIF*LSLCASTTVNGMHSSVSSV 579
+F G A++ N+PF +S +++ S +T ++G+H V ++
Sbjct: 184 LFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTI 225
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 669 ILVGKTRFKNTGYLRICICWWCNSPTESHTVVVVTATL*KDXLETCE 809
++ GKT F + LR W N + SH A L K L T E
Sbjct: 1 MIFGKTHFLSYNILRYSTKRWMNRHSYSHHAKCTVAQLLKQNLLTFE 47
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 241 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 345
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 477 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 352
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 373 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 492
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,729,688
Number of Sequences: 5004
Number of extensions: 82119
Number of successful extensions: 266
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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