Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E10
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    36   0.008
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    29   0.93 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.5  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   8.6  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -3

Query: 796 VXAGGGXXGGXPGXXXGGAPGGAXXGXXGXP 704
           +   GG  GG PG   GGAPGGA  G    P
Sbjct: 608 IYQAGGAPGGAPGGMPGGAPGGAPGGADNGP 638



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 772 GGXPGXXXGGAPGGAXXGXXGXPPRG 695
           GG PG   GG PGGA  G  G    G
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNG 637



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 748 GGAPGGAXXGXXGXPPRGVXG 686
           GGAPGGA  G  G  P G  G
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPG 632



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 760 GXXXGGAPGGAXXGXXGXPPRGVXGXP 680
           G   GGAPGG   G  G  P G    P
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNGP 638


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 790 AGGGXXGGXPGXXXGGAPGGAXXGXXG 710
           A GG  G  PG   G APG A  G  G
Sbjct: 614 APGGMPGAAPGAAPGAAPGAAPGGDNG 640



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 796 VXAGGGXXGGXPGXXXGGAPGGAXXGXXG 710
           +   GG  GG PG   G APG A     G
Sbjct: 608 IYQAGGAPGGMPGAAPGAAPGAAPGAAPG 636



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 772 GGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
           GG PG   G APG A     G  P G  G
Sbjct: 612 GGAPGGMPGAAPGAAPGAAPGAAPGGDNG 640


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 148 SPSXXGXSXPPGPPXXRGXGGPPP 219
           +P   G   PP PP   G G PPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 149  PPPXXGPPXPRGPP 190
            PPP   PP P GPP
Sbjct: 1715 PPPPSAPPMPAGPP 1728


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 784 GGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
           GG  GG  G   GG+ GG+  G  G    G  G
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
           GGG  GG  G   GG+ GG   G  G
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRGGSRG 188


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +1

Query: 175 PPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPNPXPP 303
           PP PP  R  G PP          PP         A   P PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
           G G  GG  G   GG  GGA  G  G
Sbjct: 24  GRGGFGGGRGGARGGGRGGARGGRGG 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.145    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,065,337
Number of Sequences: 5004
Number of extensions: 9587
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)