Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_E10
(921 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10063-1|AAA57161.1| 423|Homo sapiens POU domain factor protein. 35 0.48
L20433-1|AAA65605.1| 420|Homo sapiens octamer binding transcrip... 35 0.48
AL445209-3|CAI15184.1| 419|Homo sapiens POU domain, class 4, tr... 35 0.48
X64624-1|CAA45907.1| 331|Homo sapiens RDC-1 protein. 33 1.5
BC052955-1|AAH52955.1| 505|Homo sapiens Wiskott-Aldrich syndrom... 33 1.5
AM295156-1|CAL26602.1| 505|Homo sapiens WASL protein protein. 33 1.5
AC006333-1|AAQ96857.1| 505|Homo sapiens unknown protein. 33 1.5
BC110393-1|AAI10394.1| 439|Homo sapiens EMI domain containing 2... 31 4.5
BC109254-1|AAI09255.1| 439|Homo sapiens EMI domain containing 2... 31 4.5
AJ416091-1|CAC94778.1| 441|Homo sapiens putative emu2 protein p... 31 4.5
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 31 5.9
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 31 5.9
D88460-1|BAA20128.1| 505|Homo sapiens N-WASP protein. 31 5.9
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 31 5.9
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 31 5.9
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 31 5.9
M99061-1|AAC83410.1| 645|Homo sapiens epidermal cytokeratin 2 p... 31 7.8
AF154915-2|AAF79045.1| 338|Homo sapiens transcription factor HO... 31 7.8
AF019084-1|AAB81946.1| 645|Homo sapiens keratin 2e protein. 31 7.8
>U10063-1|AAA57161.1| 423|Homo sapiens POU domain factor protein.
Length = 423
Score = 34.7 bits (76), Expect = 0.48
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
GGG GG PG GG PGG G G
Sbjct: 159 GGGPGGGGPGGGGGGGPGGGGGGPGG 184
>L20433-1|AAA65605.1| 420|Homo sapiens octamer binding
transcription factor 1 protein.
Length = 420
Score = 34.7 bits (76), Expect = 0.48
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
GGG GG PG GG PGG G G
Sbjct: 156 GGGPGGGGPGGGGGGGPGGGGGGPGG 181
>AL445209-3|CAI15184.1| 419|Homo sapiens POU domain, class 4,
transcription factor 1 protein.
Length = 419
Score = 34.7 bits (76), Expect = 0.48
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
GGG GG PG GG PGG G G
Sbjct: 155 GGGGPGGGPGGGGGGGPGGGGGGPGG 180
Score = 33.5 bits (73), Expect = 1.1
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
GG GG PG GG GG G G P G+ G
Sbjct: 151 GGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLG 184
Score = 32.3 bits (70), Expect = 2.5
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = -3
Query: 790 AGGGXX----GGXPGXXXGGAPGGAXXGXXGXPPRGVXGXP 680
AGGG GG G GG PGG G G P G G P
Sbjct: 138 AGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGP 178
>X64624-1|CAA45907.1| 331|Homo sapiens RDC-1 protein.
Length = 331
Score = 33.1 bits (72), Expect = 1.5
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
GGG GG PG GGA GG G G
Sbjct: 70 GGGPGGGGPGGGGGGAAGGGGGGPGG 95
>BC052955-1|AAH52955.1| 505|Homo sapiens Wiskott-Aldrich
syndrome-like protein.
Length = 505
Score = 33.1 bits (72), Expect = 1.5
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPNPXPPX*KXPXXXP 330
P S PP PP RG G PPP PP A P P PP P P
Sbjct: 291 PPPPHNSGPP-PPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVP-PPPPNRMYPPPPP 348
>AM295156-1|CAL26602.1| 505|Homo sapiens WASL protein protein.
Length = 505
Score = 33.1 bits (72), Expect = 1.5
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPNPXPPX*KXPXXXP 330
P S PP PP RG G PPP PP A P P PP P P
Sbjct: 291 PPPPHNSGPP-PPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVP-PPPPNRMYPPPPP 348
>AC006333-1|AAQ96857.1| 505|Homo sapiens unknown protein.
Length = 505
Score = 33.1 bits (72), Expect = 1.5
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPNPXPPX*KXPXXXP 330
P S PP PP RG G PPP PP A P P PP P P
Sbjct: 291 PPPPHNSGPP-PPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVP-PPPPNRMYPPPPP 348
>BC110393-1|AAI10394.1| 439|Homo sapiens EMI domain containing 2
protein.
Length = 439
Score = 31.5 bits (68), Expect = 4.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPP 216
P G PPGPP RG GPP
Sbjct: 302 PGPRGPPGPPGPPGPRGPPGPP 323
>BC109254-1|AAI09255.1| 439|Homo sapiens EMI domain containing 2
protein.
Length = 439
Score = 31.5 bits (68), Expect = 4.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPP 216
P G PPGPP RG GPP
Sbjct: 302 PGPRGPPGPPGPPGPRGPPGPP 323
>AJ416091-1|CAC94778.1| 441|Homo sapiens putative emu2 protein
protein.
Length = 441
Score = 31.5 bits (68), Expect = 4.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPP 216
P G PPGPP RG GPP
Sbjct: 304 PGPRGPPGPPGPPGPRGPPGPP 325
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.1 bits (67), Expect = 5.9
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPN-PXPP 303
P G PPGPP + GPPP R P G P+ P PP
Sbjct: 298 PPVPGYGPPPGPPPPQ--QGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 347
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.1 bits (67), Expect = 5.9
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPN-PXPP 303
P G PPGPP + GPPP R P G P+ P PP
Sbjct: 298 PPVPGYGPPPGPPPPQ--QGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 347
>D88460-1|BAA20128.1| 505|Homo sapiens N-WASP protein.
Length = 505
Score = 31.1 bits (67), Expect = 5.9
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPNPXPPX*KXPXXXP 330
P S PP PP RG G PPP PP P P PP P P
Sbjct: 291 PPPPHSSGPP-PPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVEVP-PPPPNRMYPPPPP 348
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 31.1 bits (67), Expect = 5.9
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPN-PXPP 303
P G PPGPP + GPPP R P G P+ P PP
Sbjct: 225 PPVPGYGPPPGPPPPQ--QGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 274
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 31.1 bits (67), Expect = 5.9
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPN-PXPP 303
P G PPGPP + GPPP R P G P+ P PP
Sbjct: 335 PPVPGYGPPPGPPPPQ--QGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 384
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.1 bits (67), Expect = 5.9
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPN-PXPP 303
P G PPGPP + GPPP R P G P+ P PP
Sbjct: 298 PPVPGYGPPPGPPPPQ--QGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 347
>M99061-1|AAC83410.1| 645|Homo sapiens epidermal cytokeratin 2
protein.
Length = 645
Score = 30.7 bits (66), Expect = 7.8
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 302 GGXGFGXA*XFXXXPLXGGSLXXXXHXXGGGPPXPRXXGGPGG 174
GG GFG F GG GGP GGPGG
Sbjct: 104 GGSGFGGGSGFSGGGFGGGGFGGGRFGGFGGPGGVGGLGGPGG 146
>AF154915-2|AAF79045.1| 338|Homo sapiens transcription factor
HOXD11 protein.
Length = 338
Score = 30.7 bits (66), Expect = 7.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPP 701
GGG G G GG PGG G G P
Sbjct: 77 GGGGGGSAGGGSSGGGPGGGGGGAGGYAP 105
>AF019084-1|AAB81946.1| 645|Homo sapiens keratin 2e protein.
Length = 645
Score = 30.7 bits (66), Expect = 7.8
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 302 GGXGFGXA*XFXXXPLXGGSLXXXXHXXGGGPPXPRXXGGPGG 174
GG GFG F GG GGP GGPGG
Sbjct: 104 GGSGFGGGSGFSGGGFGGGGFGGGRFGGFGGPGGVGGLGGPGG 146
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.316 0.145 0.510
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,063,192
Number of Sequences: 237096
Number of extensions: 1078334
Number of successful extensions: 12902
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10859
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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