Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_E10
(921 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying de... 33 0.29
Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical pr... 32 0.66
Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical pr... 32 0.66
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 31 0.88
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 31 0.88
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 30 2.0
Z69386-1|CAA93430.1| 241|Caenorhabditis elegans Hypothetical pr... 30 2.7
U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 4.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 4.7
DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-lik... 29 4.7
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 4.7
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 29 4.7
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical pr... 28 8.2
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 8.2
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 8.2
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 8.2
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 8.2
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 8.2
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 8.2
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 8.2
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.2
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 8.2
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 8.2
>AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying
defective protein 4,isoform a protein.
Length = 780
Score = 33.1 bits (72), Expect = 0.29
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
GGG GG G GGAPGG G G
Sbjct: 11 GGGGGGGASGGAGGGAPGGGGGGIRG 36
>Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 31.9 bits (69), Expect = 0.66
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 784 GGXXGGXPGXXXGGAPGGAXXG 719
GG GG PG GGAPGG G
Sbjct: 298 GGMPGGFPGAPGGGAPGGMGAG 319
>Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 31.9 bits (69), Expect = 0.66
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 784 GGXXGGXPGXXXGGAPGGAXXG 719
GG GG PG GGAPGG G
Sbjct: 298 GGMPGGFPGAPGGGAPGGMGAG 319
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 31.5 bits (68), Expect = 0.88
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPP 216
P G PPGPP RG GPP
Sbjct: 242 PGPIGEMGPPGPPGPRGEPGPP 263
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 163 GXSXPPGPPXXRGXGGPP 216
G PPGPP RG GPP
Sbjct: 212 GIKGPPGPPGPRGPKGPP 229
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 31.5 bits (68), Expect = 0.88
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPP 216
P G PPGPP RG GPP
Sbjct: 242 PGPIGEMGPPGPPGPRGEPGPP 263
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 163 GXSXPPGPPXXRGXGGPP 216
G PPGPP RG GPP
Sbjct: 212 GIKGPPGPPGPRGPKGPP 229
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +1
Query: 163 GXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPNPXPPX*KXPXXXPTXXG 342
G PPGPP G G P + P G P P PP K P P G
Sbjct: 111 GPPGPPGPPGRDGRPGAP-----GRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAG 165
>Z69386-1|CAA93430.1| 241|Caenorhabditis elegans Hypothetical
protein ZK596.1 protein.
Length = 241
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
G G GG PG GG PGG G G
Sbjct: 161 GQGPFGGFPGGHQGGFPGGNQGGFGG 186
>U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical
protein F12A10.1 protein.
Length = 120
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 784 GGXXGGXPGXXXGGAPGGAXXGXXGXP 704
GG GG PG GG PGG G P
Sbjct: 57 GGWGGGYPGGYGGGYPGGYSGYGGGYP 83
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRG 695
GGG GG G GG GG G G RG
Sbjct: 33 GGGYSGGRGGGYGGGGGGGYGGGGYGGGGRG 63
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
GGG GG G GG GG G G G G
Sbjct: 109 GGGGGGGCGGGGGGGCGGGGGGGGGGYASGGSGG 142
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPP 216
P G PPGPP G GPP
Sbjct: 223 PGDSGPPGPPGPPGAPGNDGPP 244
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGP--PP 219
P G PPGPP +G GP PP
Sbjct: 235 PGAPGNDGPPGPPGPKGAPGPDGPP 259
>Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
GGG GG PG GG G P GV G
Sbjct: 115 GGGLPGGAPGQLPGGNQSGIQFQCPRRPNHGVEG 148
>Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
GGG GG PG GG G P GV G
Sbjct: 115 GGGLPGGAPGQLPGGNQSGIQFQCPRRPNHGVEG 148
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
GGG GG G GG GG+ G G G G
Sbjct: 132 GGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGG 165
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
GGG GG G GG GG G G G G
Sbjct: 140 GGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
GGG GG G GG+ GG G G
Sbjct: 128 GGGCGGGGGGGCGGGSSGGCGGGSSG 153
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
GGG GG G GG GG+ G G G G
Sbjct: 132 GGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGG 165
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
GGG GG G GG GG G G G G
Sbjct: 140 GGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
GGG GG G GG+ GG G G
Sbjct: 128 GGGCGGGGGGGCGGGSSGGCGGGSSG 153
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPP 216
P G PPGPP G GPP
Sbjct: 218 PGDSGPPGPPGPPGAPGNDGPP 239
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGP--PP 219
P G PPGPP +G GP PP
Sbjct: 230 PGAPGNDGPPGPPGPKGAPGPDGPP 254
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPP 216
P G PPGPP G GPP
Sbjct: 218 PGDSGPPGPPGPPGAPGNDGPP 239
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGP--PP 219
P G PPGPP +G GP PP
Sbjct: 230 PGAPGNDGPPGPPGPKGAPGPDGPP 254
>DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-like
protein.
Length = 1010
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
GGG GG PG GG G P GV G
Sbjct: 123 GGGLPGGAPGQLPGGNQSGIQFQCPRRPNHGVEG 156
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
GGG GG G GGA GG G G
Sbjct: 101 GGGGYGGGHGGGHGGAVGGGYGGGGG 126
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXG 710
GGG GG G GG GGA G G
Sbjct: 77 GGGYGGGHGGAAVGGGYGGAVGGGGG 102
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPP 216
P G PPGPP G GPP
Sbjct: 234 PGQSGPPGPPGPPGNVGEAGPP 255
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPR 698
GGG GG G GG GG G G R
Sbjct: 166 GGGGCGGGGGGGCGGGGGGGCGGGCGRKKR 195
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPG-GAXXGXXGXPPR-GVXGXP 680
GGG GG G G PG G G G P + G G P
Sbjct: 91 GGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAP 128
>Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical
protein F41E7.5 protein.
Length = 112
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 796 VXAGGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
+ GGG GG PG G GG G P RG G
Sbjct: 30 IRGGGGGFGGGPGQFGRGGFGGGPGSNYG-PGRGGFG 65
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPG-GAXXGXXGXPPR-GVXGXP 680
GGG GG G G PG G G G P + G G P
Sbjct: 91 GGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAP 128
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPNPXPPX*KXPXXXP 330
P G PPGPP G G P EP G P PP P P
Sbjct: 185 PGEAGPKGPPGPPGSPGAPGEPGRPGDDAPSEPLIPGEPGPQGP---PGPPGQAGPDGQP 241
Query: 331 TXXG 342
G
Sbjct: 242 GAPG 245
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
G G GG PG G P G G G PP G G
Sbjct: 176 GHGGMGGPPGHGGQGGPPG--HGGMGGPPPGQGG 207
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPGGAXXGXXGXPPRGVXG 686
G G GG PG G P G G G PP G G
Sbjct: 456 GHGGMGGPPGHGGQGGPPG--HGGMGGPPPGQGG 487
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPG-GAXXGXXGXPPR-GVXGXP 680
GGG GG G G PG G G G P + G G P
Sbjct: 91 GGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAP 128
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -3
Query: 787 GGGXXGGXPGXXXGGAPG-GAXXGXXGXPPR-GVXGXP 680
GGG GG G G PG G G G P + G G P
Sbjct: 91 GGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAP 128
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -3
Query: 790 AGGGXXGGXPGXXXGGAPGGAXXGXXGXPPRG 695
AGG GG G GGA GGA G RG
Sbjct: 523 AGGEAPGGGAGGRGGGAHGGAGRGGGYQGGRG 554
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGPPPXXWXXKXREPPXXGXXXXXXAXPNPXPP 303
P G P GPP G G PP + PP G P PP
Sbjct: 290 PQQFGGPPPSGPPSEYG-GYAPPQQQQQQFGAPPPQGAPQQGFGAPPQGPP 339
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -3
Query: 790 AGGGXXGGXPGXXXGGAPGGAXXGXXGXPPRG 695
AGG GG G GGA GGA G RG
Sbjct: 523 AGGEAPGGGAGGRGGGAHGGAGRGGGYQGGRG 554
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 151 PSXXGXSXPPGPPXXRGXGGP 213
PS G PPGPP G GP
Sbjct: 258 PSPAGTPGPPGPPGKDGEAGP 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.145 0.510
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,218,138
Number of Sequences: 27780
Number of extensions: 130850
Number of successful extensions: 2174
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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