Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_E09
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0131 - 15576422-15577021 67 2e-11
06_03_0221 - 18373772-18373999,18375504-18375506 64 1e-10
06_03_0226 - 18420293-18420697 62 6e-10
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 30 2.1
09_02_0181 - 5425833-5426527,5426667-5429397 30 2.8
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930... 30 2.8
12_02_0328 - 17578190-17578240,17579307-17579379,17579715-175797... 29 3.8
04_04_0138 + 23067885-23068245,23068393-23068634 29 3.8
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605... 29 3.8
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 29 5.0
08_01_0559 + 4938373-4938524,4938886-4938964,4939046-4939138,494... 29 5.0
02_05_1162 - 34593101-34594624 29 5.0
02_01_0249 - 1644280-1645161,1645328-1645432,1646322-1646805,164... 29 6.6
01_06_1145 - 34883948-34884168,34884283-34884573,34884625-34885117 29 6.6
07_03_0387 - 17536026-17536636,17536772-17537150 28 8.7
03_02_0862 + 11886576-11886624,11886789-11887354 28 8.7
>02_03_0131 - 15576422-15577021
Length = 199
Score = 67.3 bits (157), Expect = 2e-11
Identities = 36/54 (66%), Positives = 42/54 (77%), Gaps = 2/54 (3%)
Frame = +2
Query: 419 EEQEMLKVMGF-CGFDTTKGKKV-DGNVEGDVHVVLKRKYRQYMNRKGGFNRPL 574
EE EM+K+MG GFD+TKGK V D +V G V VV KR+ RQYMNR+GGFNRPL
Sbjct: 141 EELEMMKMMGIPVGFDSTKGKHVPDADVSG-VRVVTKRQPRQYMNRRGGFNRPL 193
>06_03_0221 - 18373772-18373999,18375504-18375506
Length = 76
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/54 (64%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Frame = +2
Query: 419 EEQEMLKVMGF-CGFDTTKGKKV-DGNVEGDVHVVLKRKYRQYMNRKGGFNRPL 574
EE EM+K+MG GFD+TKGK V D +V G V VV KR+ RQYMN +GGFNRPL
Sbjct: 18 EELEMMKMMGIPVGFDSTKGKHVPDADVSG-VRVVTKRQPRQYMNCRGGFNRPL 70
>06_03_0226 - 18420293-18420697
Length = 134
Score = 62.1 bits (144), Expect = 6e-10
Identities = 34/54 (62%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Frame = +2
Query: 419 EEQEMLKVMGF-CGFDTTKGKKV-DGNVEGDVHVVLKRKYRQYMNRKGGFNRPL 574
EE EM+K+MG GFD+TKGK V D +V G V VV KR+ YMNR+GGFNRPL
Sbjct: 76 EELEMMKMMGIPVGFDSTKGKHVPDADVSG-VRVVTKRQPWHYMNRRGGFNRPL 128
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 219 TAPSDQISVPLPGPAETQPRQTQVSVTAPPPIEFALADTEHLXS*DKRNRSENA 380
TAP + P PA P+Q V+V APPP TE + + N NA
Sbjct: 79 TAPPPP-AAPAVTPARPPPQQPAVAVAAPPPATTMATATEEVAAPATGNPMANA 131
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 170 LGGATTDAAKTGERGRDGALGPDLGPAPWTGGDAAP 277
LGG A++T E DGA G G + W GG AP
Sbjct: 974 LGGTGPCASRT-ENADDGAAGGGDGGSTWGGGSGAP 1008
>06_03_0223 -
18391177-18391287,18391570-18392081,18392200-18393019,
18393603-18393671,18393973-18394062,18395381-18395575
Length = 598
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 407 GKTPEEQEMLKVMGF-CGFDTTKGKKV-DGNVEGDVHVVLKRKYRQYMN 547
G+ + E L++MG GFD+TKGK V D +V G + +V++R + N
Sbjct: 32 GEGDVDVEELEMMGIPVGFDSTKGKHVPDADVSG-IQLVVQRNEQLLYN 79
>12_02_0328 -
17578190-17578240,17579307-17579379,17579715-17579765,
17579863-17580332
Length = 214
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 231 DQISVPLPGPAETQPRQTQVS-VTAPPP 311
D + P P P + QP+Q Q +TAPPP
Sbjct: 14 DTAAAPPPPPPQEQPQQQQPELITAPPP 41
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 213 GETAPSDQISVPLPGPAETQP-RQTQVSVTAPPP 311
G APS +SVP P T P T V+VT PP
Sbjct: 125 GGAAPSPPVSVPRSTPNSTAPSTPTPVTVTRAPP 158
>01_06_1105 -
34559694-34559852,34560298-34560312,34560451-34560522,
34560695-34561549
Length = 366
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 125 TVDLKIRRQWVGRLALGGATTDAAKTGERGRDGALGPD-LGPAPWTGGDAA 274
TVDL W+ + A+TDA G++G GA P+ L P P G A
Sbjct: 173 TVDLAPGSHWIEQYKQQIASTDAHHHGQQGVQGAYFPNRLVPQPLNVGPGA 223
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 219 TAPSDQISVPLPGPAETQPRQTQVSVTAPPPIE 317
T P+ S PLP P+ P Q Q + PP +
Sbjct: 169 TQPTTPTSTPLPAPSAMAPGQPQQPIQQTPPTQ 201
>08_01_0559 +
4938373-4938524,4938886-4938964,4939046-4939138,
4941197-4941271,4942328-4942401,4943229-4943284,
4943293-4943552,4945456-4945590
Length = 307
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 206 ERGRDGALGPDLGPAPWTGGDAAPTDA 286
E+G GA+G D GP GGD P A
Sbjct: 268 EKGPVGAVGGDRGPVDAVGGDREPVGA 294
>02_05_1162 - 34593101-34594624
Length = 507
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 252 PGPAETQPRQTQVSVTAPPP 311
P P+ QP+Q VSV +PPP
Sbjct: 193 PPPSPPQPKQESVSVQSPPP 212
>02_01_0249 -
1644280-1645161,1645328-1645432,1646322-1646805,
1647680-1647884,1648538-1648808
Length = 648
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 325 RANSIGGGAVTETCVCRGCVSA 260
R S GGGAV VC GC++A
Sbjct: 5 RRGSSGGGAVLVVVVCVGCIAA 26
>01_06_1145 - 34883948-34884168,34884283-34884573,34884625-34885117
Length = 334
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 200 TGERGRDGALGPDLGPAPWTGGDAAPTDAG 289
TG A G DLGP P T G A P D+G
Sbjct: 67 TGAERTCSAFGADLGPKP-TPGRALPADSG 95
>07_03_0387 - 17536026-17536636,17536772-17537150
Length = 329
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 222 APSDQISVPLPGPAETQPR-QTQVSVTAPPPIEFALADTEHL 344
AP + +PLP PA PR T + V PPP+ T+H+
Sbjct: 179 APPLPLPLPLP-PAPVFPRVSTVLGVAPPPPLPSPPPSTQHV 219
>03_02_0862 + 11886576-11886624,11886789-11887354
Length = 204
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +2
Query: 173 GGATTDAAKTGERGRDGALGPDLGPA----PWTGGDAAPTDAGL 292
GG A T R RD A G GPA W GG P +G+
Sbjct: 95 GGGARQGAATVARRRDAAGGGGGGPAAGSGTWQGGGGTPPRSGV 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,034,411
Number of Sequences: 37544
Number of extensions: 389817
Number of successful extensions: 1542
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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