Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E09
         (884 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X76302-1|CAA53949.1|  163|Homo sapiens nucleic acid binding prot...   101   3e-21
BC017890-1|AAH17890.1|  155|Homo sapiens putative nucleic acid b...   101   3e-21
AC019206-3|AAY14866.1|  155|Homo sapiens unknown protein.             101   3e-21
BC042428-1|AAH42428.1|  309|Homo sapiens COL23A1 protein protein.      31   4.2  
AY898961-1|AAX84028.1|  540|Homo sapiens type XXIII collagen pro...    31   4.2  
AY158895-1|AAO18361.1|  540|Homo sapiens alpha 1 type XXIII coll...    31   4.2  
AF258576-1|AAG23779.1|  104|Homo sapiens PP4277 protein.               31   7.3  

>X76302-1|CAA53949.1|  163|Homo sapiens nucleic acid binding protein
           protein.
          Length = 163

 Score =  101 bits (242), Expect = 3e-21
 Identities = 48/66 (72%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
 Frame = +2

Query: 386 ITPADLEGKTPEEQEMLKVMGFCGFDTTKGKKVDGNVEG-DVHVVLKRKYRQYMNRKGGF 562
           IT  DLEGKT EE EM+K+MGF  FD+TKGKKVDG+V    ++V  KRKYRQYMNRKGGF
Sbjct: 96  ITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGF 155

Query: 563 NRPLDF 580
           NRPLDF
Sbjct: 156 NRPLDF 161


>BC017890-1|AAH17890.1|  155|Homo sapiens putative nucleic acid
           binding protein RY-1 protein.
          Length = 155

 Score =  101 bits (242), Expect = 3e-21
 Identities = 48/66 (72%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
 Frame = +2

Query: 386 ITPADLEGKTPEEQEMLKVMGFCGFDTTKGKKVDGNVEG-DVHVVLKRKYRQYMNRKGGF 562
           IT  DLEGKT EE EM+K+MGF  FD+TKGKKVDG+V    ++V  KRKYRQYMNRKGGF
Sbjct: 88  ITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGF 147

Query: 563 NRPLDF 580
           NRPLDF
Sbjct: 148 NRPLDF 153


>AC019206-3|AAY14866.1|  155|Homo sapiens unknown protein.
          Length = 155

 Score =  101 bits (242), Expect = 3e-21
 Identities = 48/66 (72%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
 Frame = +2

Query: 386 ITPADLEGKTPEEQEMLKVMGFCGFDTTKGKKVDGNVEG-DVHVVLKRKYRQYMNRKGGF 562
           IT  DLEGKT EE EM+K+MGF  FD+TKGKKVDG+V    ++V  KRKYRQYMNRKGGF
Sbjct: 88  ITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGF 147

Query: 563 NRPLDF 580
           NRPLDF
Sbjct: 148 NRPLDF 153


>BC042428-1|AAH42428.1|  309|Homo sapiens COL23A1 protein protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 176 GATTDAAKTGERGRDGALGPDLGPAPWTGGDAAPTDAG 289
           GA  D    G++G+DGA GP   P P  G    P D G
Sbjct: 130 GAPGDFGPRGDQGQDGAAGPPGPPGP-PGARGPPGDTG 166


>AY898961-1|AAX84028.1|  540|Homo sapiens type XXIII collagen
           protein.
          Length = 540

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 176 GATTDAAKTGERGRDGALGPDLGPAPWTGGDAAPTDAG 289
           GA  D    G++G+DGA GP   P P  G    P D G
Sbjct: 166 GAPGDFGPRGDQGQDGAAGPPGPPGP-PGARGPPGDTG 202


>AY158895-1|AAO18361.1|  540|Homo sapiens alpha 1 type XXIII
           collagen protein.
          Length = 540

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 176 GATTDAAKTGERGRDGALGPDLGPAPWTGGDAAPTDAG 289
           GA  D    G++G+DGA GP   P P  G    P D G
Sbjct: 166 GAPGDFGPRGDQGQDGAAGPPGPPGP-PGARGPPGDTG 202


>AF258576-1|AAG23779.1|  104|Homo sapiens PP4277 protein.
          Length = 104

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 301 AVTETCVCRGCVSAGPGSGTEIWSEGAVSPSLACL 197
           A T +C CR C+S  PG    +   G V P+ ACL
Sbjct: 68  AKTYSCPCRACISCSPGYHNGVPFGGDVRPA-ACL 101


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,166,243
Number of Sequences: 237096
Number of extensions: 2024600
Number of successful extensions: 7066
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7027
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)