Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E09
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-6|CAA99894.1|  155|Caenorhabditis elegans Hypothetical pr...    81   1e-15
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    33   0.27 
U50312-9|AAA92325.1|  294|Caenorhabditis elegans Collagen protei...    33   0.36 
U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protei...    33   0.36 
U55373-4|ABR92605.1|  210|Caenorhabditis elegans Collagen protei...    29   4.4  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   4.4  
L16560-3|AAA27998.1|  195|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z75546-6|CAA99894.1|  155|Caenorhabditis elegans Hypothetical
           protein R05D11.7 protein.
          Length = 155

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 34/54 (62%), Positives = 44/54 (81%)
 Frame = +2

Query: 419 EEQEMLKVMGFCGFDTTKGKKVDGNVEGDVHVVLKRKYRQYMNRKGGFNRPLDF 580
           +++ M+  MGF GFDTTK K+V+ NV+G V++   R+YRQYMNRKGGFNRPLDF
Sbjct: 100 DDEAMMAAMGFGGFDTTKNKQVNDNVDGCVNIKKPRRYRQYMNRKGGFNRPLDF 153


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 500 LQRYHRLSYLSLCRNRKSP*PLTFPVPPEFFLLSLPVL*WGVLRS 366
           ++R   + Y SL R+RK+P P   P PP      LP   +G +R+
Sbjct: 359 MEREIEMFYTSLFRSRKTPPPPQLPTPPPIMAEPLPPFLFGEIRA 403


>U50312-9|AAA92325.1|  294|Caenorhabditis elegans Collagen protein
           10 protein.
          Length = 294

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 176 GATTDAAKTGERGRDGALGPD--LGPAPWTGGDAAPTDAG 289
           GA  +A   G  G+DGA G D   GPA   G D AP +AG
Sbjct: 221 GAPGNAGPAGPAGQDGAPGQDGQPGPAGPAGQDGAPGNAG 260


>U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protein
           144 protein.
          Length = 306

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 176 GATTDAAKTGERGRDGALGPD--LGPAPWTGGDAAPTDAG 289
           GA  +A   G  G+DGA G D   GPA   G D AP +AG
Sbjct: 233 GAPGNAGPAGPAGQDGAPGQDGQPGPAGPAGQDGAPGNAG 272


>U55373-4|ABR92605.1|  210|Caenorhabditis elegans Collagen protein
           140, isoform b protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +2

Query: 176 GATTDAAKTGERGRDGALGPDLGP-APWTGG---DAAP-TDAG 289
           G    A  +G+ GR G  GP  GP  P  GG   DAAP  DAG
Sbjct: 157 GEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGEDAAPGPDAG 199


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 222 APSDQISVPLPGPAETQPRQTQVSVTAPPPIEF 320
           AP  Q +VP P P      Q  V V APPP  +
Sbjct: 70  APYPQHAVPAPAPPLASYPQNAVPVPAPPPAPY 102


>L16560-3|AAA27998.1|  195|Caenorhabditis elegans Hypothetical
           protein D2007.2 protein.
          Length = 195

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 258 PAETQPRQTQVSVTAPPP-IEFALADTEHLXS*DKRNRS 371
           P     RQTQ  ++AP P I  AL+D E+L    + +RS
Sbjct: 19  PGRQTGRQTQQQISAPEPMIAIALSDMEYLMRSARSSRS 57


>Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical
           protein K08C9.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 176 GATTDAAKTGERGRDGALGPDLGPAPWTGGDAAP 277
           GA       G  G+DG  GPD G A   GG+ AP
Sbjct: 232 GAQGTEGIAGAPGKDGETGPD-GAAGEAGGEGAP 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,195
Number of Sequences: 27780
Number of extensions: 317376
Number of successful extensions: 1145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)