Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E08
         (913 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MIP9 Cluster: Mitochondrial ATP synthase coupling fac...    70   1e-10
UniRef50_Q24407 Cluster: ATP synthase-coupling factor 6, mitocho...    51   5e-05
UniRef50_Q09JF4 Cluster: Mitochondrial F1F0 ATP-synthase subunit...    50   1e-04
UniRef50_Q29E93 Cluster: GA11349-PA; n=1; Drosophila pseudoobscu...    48   4e-04
UniRef50_Q4QQ07 Cluster: IP06415p; n=2; Drosophila melanogaster|...    45   0.002
UniRef50_Q1WCC6 Cluster: Putative uncharacterized protein; n=2; ...    38   0.27 
UniRef50_UPI0000584DD8 Cluster: PREDICTED: similar to MGC68738 p...    36   1.1  
UniRef50_UPI00003C0C25 Cluster: PREDICTED: similar to ATPase cou...    35   2.5  

>UniRef50_Q5MIP9 Cluster: Mitochondrial ATP synthase coupling factor
           6; n=3; Endopterygota|Rep: Mitochondrial ATP synthase
           coupling factor 6 - Aedes albopictus (Forest day
           mosquito)
          Length = 106

 Score = 69.7 bits (163), Expect = 1e-10
 Identities = 34/79 (43%), Positives = 43/79 (54%)
 Frame = +2

Query: 191 LRKLPIPSNSCF*IKSGXYKQKSAGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTA 370
           L K   P    F  K   YK KS+GGK+ D +P +             QYGG  G+DMTA
Sbjct: 28  LSKATDPIQQLFVNKLRDYKSKSSGGKLVDPTPEIERELKQELEKLAKQYGGASGVDMTA 87

Query: 371 FPSLKFEEPKLDPIDEQAA 427
           FP+ KFEEPK+ PI+  +A
Sbjct: 88  FPTFKFEEPKMGPINSSSA 106


>UniRef50_Q24407 Cluster: ATP synthase-coupling factor 6,
           mitochondrial precursor; n=4; Endopterygota|Rep: ATP
           synthase-coupling factor 6, mitochondrial precursor -
           Drosophila melanogaster (Fruit fly)
          Length = 106

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 27/76 (35%), Positives = 36/76 (47%)
 Frame = +2

Query: 191 LRKLPIPSNSCF*IKSGXYKQKSAGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTA 370
           L K   P    F  K   YKQKSAGGK+ D++P +             Q+G     DM  
Sbjct: 28  LNKASDPIQQLFLDKVREYKQKSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLK 87

Query: 371 FPSLKFEEPKLDPIDE 418
           FP  +F + K+DPI +
Sbjct: 88  FPEFQFPDVKVDPITQ 103



 Score = 35.5 bits (78), Expect = 1.9
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 127 SKLVGLRAATTSMMVTRNLAAA--QKATDPIQQLFLDKIRXIQTEERG 264
           S L G+R   T       + A    KA+DPIQQLFLDK+R  + +  G
Sbjct: 5   SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAG 52


>UniRef50_Q09JF4 Cluster: Mitochondrial F1F0 ATP-synthase subunit
           Cf6; n=1; Argas monolakensis|Rep: Mitochondrial F1F0
           ATP-synthase subunit Cf6 - Argas monolakensis
          Length = 109

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 209 PSNSCF*IKSGXYKQKS--AGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSL 382
           P    F  K   Y QKS  +G    D +P +             QYGGG GIDMT FP  
Sbjct: 35  PVQKLFVDKLREYTQKSKMSGDLFVDPNPVIMKEYEDDIKRAEVQYGGGKGIDMTKFPEF 94

Query: 383 KFEEPKLDPI 412
           KF +P+LD +
Sbjct: 95  KFADPQLDSV 104


>UniRef50_Q29E93 Cluster: GA11349-PA; n=1; Drosophila
           pseudoobscura|Rep: GA11349-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 180

 Score = 47.6 bits (108), Expect = 4e-04
 Identities = 26/73 (35%), Positives = 32/73 (43%)
 Frame = +2

Query: 194 RKLPIPSNSCF*IKSGXYKQKSAGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAF 373
           R+   P    F  K   Y++KS  GK  DA P               +YGGG G+DM  F
Sbjct: 23  RRYKDPIYEIFLAKVKEYREKSPTGKPLDAGPEFEKELNETLEKLALKYGGGEGVDMLEF 82

Query: 374 PSLKFEEPKLDPI 412
           P  K  E  LDP+
Sbjct: 83  PKFKEPEVTLDPL 95


>UniRef50_Q4QQ07 Cluster: IP06415p; n=2; Drosophila
           melanogaster|Rep: IP06415p - Drosophila melanogaster
           (Fruit fly)
          Length = 159

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 25/75 (33%), Positives = 30/75 (40%)
 Frame = +2

Query: 209 PSNSCF*IKSGXYKQKSAGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKF 388
           P    F  K   Y+ KS  GK  D  P               QYGGG G+DM  FP  K 
Sbjct: 39  PIYQIFLDKVREYRLKSPKGKPVDPGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKL 98

Query: 389 EEPKLDPIDEQAAPK 433
            +  +DPI     P+
Sbjct: 99  PDIDIDPISVDDLPE 113


>UniRef50_Q1WCC6 Cluster: Putative uncharacterized protein; n=2;
           Otophysi|Rep: Putative uncharacterized protein -
           Ictalurus punctatus (Channel catfish)
          Length = 66

 Score = 38.3 bits (85), Expect = 0.27
 Identities = 23/61 (37%), Positives = 29/61 (47%)
 Frame = +2

Query: 230 IKSGXYKQKSAGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKFEEPKLDP 409
           I+    K KS+GG V DA P+               YGGG   D+T FP   F EPKL+ 
Sbjct: 8   IRDYSVKSKSSGGVV-DAGPSYQKNMTEEISKLQRLYGGG---DLTKFPEFTFTEPKLEE 63

Query: 410 I 412
           +
Sbjct: 64  V 64


>UniRef50_UPI0000584DD8 Cluster: PREDICTED: similar to MGC68738
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to MGC68738 protein -
           Strongylocentrotus purpuratus
          Length = 112

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 248 KQKSAGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKFEE 394
           K+KSAGGK+ D+ P                +GGG   DMT FP+ +F++
Sbjct: 58  KKKSAGGKLVDSDPQTEKEMATEIGKLNKMFGGG---DMTQFPTFEFKD 103


>UniRef50_UPI00003C0C25 Cluster: PREDICTED: similar to ATPase
           coupling factor 6 CG4412-PA; n=2; Apocrita|Rep:
           PREDICTED: similar to ATPase coupling factor 6 CG4412-PA
           - Apis mellifera
          Length = 125

 Score = 35.1 bits (77), Expect = 2.5
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = +2

Query: 209 PSNSCF*IKSGXYKQKSAGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKF 388
           P    F  K   YK KS+GGK+ D +P +             Q+      D T FP  KF
Sbjct: 61  PIQKLFLDKIREYKAKSSGGKLVDVTPEIEKERQAELDRVKKQFNIKG--DPTEFPKFKF 118

Query: 389 EEPKLD 406
           +EP ++
Sbjct: 119 QEPVVE 124



 Score = 33.5 bits (73), Expect = 7.7
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 187 AAQKATDPIQQLFLDKIRXIQTEERG 264
           A Q+A DPIQ+LFLDKIR  + +  G
Sbjct: 54  AFQEAKDPIQKLFLDKIREYKAKSSG 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,852,747
Number of Sequences: 1657284
Number of extensions: 9052524
Number of successful extensions: 16326
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16323
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83211448033
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)