Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E08
         (913 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0619 - 8125611-8127967,8128449-8130123                           31   1.7  
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244...    29   6.8  

>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = +1

Query: 52  LLISLSKLNILGEIP*SIGIRNMLVSKLVGLRAATTSMMVTRNLAAAQKATDPIQQLFLD 231
           LL+ L   N++G+IP ++G    LVS  +GL++ T S ++ + L   Q+    +  L+LD
Sbjct: 329 LLLDLGYNNLIGQIPSALGNITNLVS--LGLQSCTLSGLIPQELGQLQQ----LNALYLD 382


>06_03_0674 +
           23422004-23422552,23423295-23423369,23424360-23424443,
           23424749-23424991,23425348-23425515,23425608-23425727,
           23426372-23427016
          Length = 627

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 191 AAAKFLVTIMEVVAALKPTSFDTSIFLIPIDQGISPRIFSFDSEINKNQNLKEF 30
           AAAK    ++     L   SFD  IF+  ++Q  S  +F ++   N N+  K+F
Sbjct: 165 AAAKPRALVLAPTRELAAQSFDNVIFIDTVNQNFS--LFCYEELDNINEEAKKF 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,105,316
Number of Sequences: 37544
Number of extensions: 269273
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)