Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E06
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.2  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    26   8.2  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   8.2  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 332 VQSFSYDRDHHHYKTKLR 279
           VQS  +D +HH+YKT  R
Sbjct: 867 VQSRWHDEEHHYYKTGFR 884


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 158 ICP-IIQIILATTNLLVRKISTIISNPLKHKNNKNYIKKTMNEVLFYSDDDPDHMRMIGL 334
           ICP I++ +LA    LVR+   + S+ +K  N+       +      S+++P H +    
Sbjct: 115 ICPCILKALLA----LVRQHRELSSDIVKFLNSIFLALTRILNTPHSSNNNPTHTKTTIF 170

Query: 335 GNIFCIYYVIFKSKRTIDVCVPRLSSDA 418
             +F   ++ F  +   D C+  L  DA
Sbjct: 171 EKVFYASHLGFFFEEIADACISALPQDA 198


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 645 FQHPP--QQTFPSKIMAFGSEESITINSCSRRTSDFISFTSILFRVN 511
           F+ PP  Q+   S    +G   S+TINS +  T  F S  S    +N
Sbjct: 169 FEGPPLSQERLYSIFRTYGKLRSVTINSPTSATLSFSSLRSATSALN 215


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 251 NKNYIKKTMNEVLFYSDDDPD 313
           +KNYIKK++ E+++ ++  P+
Sbjct: 123 SKNYIKKSLQEIVYLTNMQPN 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,871
Number of Sequences: 5004
Number of extensions: 62155
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)