Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E06
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   8.6  
08_02_0009 + 11216532-11218687,11220727-11225998                       28   8.6  
08_02_0003 + 11180421-11180757,11180773-11185715                       28   8.6  
08_02_0002 + 11173365-11173512,11173528-11178470                       28   8.6  

>11_01_0110 +
           850780-850805,851465-851537,851558-851720,851947-852260,
           852330-852409,852506-852848,853068-853166,853240-853360,
           853567-853723,853976-854099,855275-855368,855866-857259,
           857882-857924,858240-858458,859379-859605,859701-859948,
           860246-860552,860725-861153
          Length = 1486

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 457 IENKNHNPQEQRPTKFTIVYSKQNRSETY 543
           I+N  H PQE+RP +F  V  +   S T+
Sbjct: 438 IKNSGHLPQEERPEEFVSVVERTAVSVTF 466


>08_02_0009 + 11216532-11218687,11220727-11225998
          Length = 2475

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = +2

Query: 344  FCIYYVIFKSKRTIDVCVPRLSSDALAKCLVKVQQQNGSKTRIIIHKSNDLRNLQLFTLN 523
            FCIYY   +++ T  +C+      A A+C+    + N  K R  I   +D + L    + 
Sbjct: 1625 FCIYYPSQENRVTCSICL----KQACAECI----KANKQKWRKEIELESDEKTLS-SRVR 1675

Query: 524  RIEVKLIKSEVRLEH 568
             +E +L K EV LE+
Sbjct: 1676 VLENRLNKLEVELEN 1690


>08_02_0003 + 11180421-11180757,11180773-11185715
          Length = 1759

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = +2

Query: 344  FCIYYVIFKSKRTIDVCVPRLSSDALAKCLVKVQQQNGSKTRIIIHKSNDLRNLQLFTLN 523
            FCIYY   +++ T  +C+      A A+C+    + N  K R  I   +D + L    + 
Sbjct: 909  FCIYYPSQENRVTCSICL----KQACAECI----KANKQKWRKEIELESDEKTLS-SRVR 959

Query: 524  RIEVKLIKSEVRLEH 568
             +E +L K EV LE+
Sbjct: 960  VLENRLNKLEVELEN 974


>08_02_0002 + 11173365-11173512,11173528-11178470
          Length = 1696

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = +2

Query: 344  FCIYYVIFKSKRTIDVCVPRLSSDALAKCLVKVQQQNGSKTRIIIHKSNDLRNLQLFTLN 523
            FCIYY   +++ T  +C+      A A+C+    + N  K R  I   +D + L    + 
Sbjct: 846  FCIYYPSQENRVTCSICL----KQACAECI----KANKQKWRKEIELESDEKTLS-SRVR 896

Query: 524  RIEVKLIKSEVRLEH 568
             +E +L K EV LE+
Sbjct: 897  VLENRLNKLEVELEN 911


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,018,128
Number of Sequences: 37544
Number of extensions: 333841
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)