Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E05
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    53   5e-08
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.7  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 27/74 (36%), Positives = 42/74 (56%)
 Frame = +3

Query: 129 KRSYSNSLRS*RQN*QIFGLLKLLGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHY 308
           + + +  L+  RQ      + K+ GG  SKLSKI+  RK IAR+  V ++  ++  R  Y
Sbjct: 13  QENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAY 72

Query: 309 KNKKYKPLXFKSQE 350
           KNKKY PL  + ++
Sbjct: 73  KNKKYIPLDLRQKK 86



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = +1

Query: 340 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 459
           R KKTRA+R+ALT +E   KT K+I+K+  FP R YA+KA
Sbjct: 83  RQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 694 TCLLQLIMVTNKAIASQISQIKHFFH 617
           +CL+ L   TN  I  ++   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,150
Number of Sequences: 5004
Number of extensions: 38286
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)