Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E05
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    57   1e-08

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/50 (56%), Positives = 34/50 (68%)
 Frame = +3

Query: 192 KLLGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLXFK 341
           K+ GG ASKLSKIRVVRK IAR+  V +Q  K  LR  Y + KYKP+  +
Sbjct: 35  KVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLR 84



 Score = 36.3 bits (80), Expect = 0.029
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +1

Query: 340 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 459
           R KKTRA+R+ LT HE  +++ K+  K      R +AVKA
Sbjct: 84  RLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,035,366
Number of Sequences: 27780
Number of extensions: 213695
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)