Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E02
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    29   1.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   2.6  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   6.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   8.0  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    26   8.0  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 653  LNKKFERDQVNLHNYFSNAFQKVAMRIFLNFKNISTSH 540
            LN   +  QV+L+++ S       + +F+NF N S SH
Sbjct: 1705 LNINIKPFQVDLNDWSSELNSNAHLELFMNFYNFSNSH 1742


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 548 SIYF*NSKKFS*QLFETHLKNNYANLLDLV 637
           S+Y  + +KF+  L E  + NNYAN+  L+
Sbjct: 651 SLYMDSKRKFNTYLAEGVVLNNYANIFQLI 680


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 491 QSLDLFVPRGI-FLHSFEVLAK**YGCLWIAKLLQENKR 378
           +S D  +P  + FL     + K  YGC ++ KLL EN +
Sbjct: 451 KSQDNQIPHLVGFLGHLSTICKDQYGCRYLQKLLDENPK 489


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 133 WIVKLLVKLYWS--YHSQRFAGSVCIEDMSASMVYLIKI*NCLLAAL 267
           ++  +L K+Y S  Y +QR      IED+   + YL+++ NC+LA L
Sbjct: 606 YVPSVLEKIYSSVGYVTQR------IEDIELRISYLMRLLNCILAQL 646


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 475 NRSKL*LNISCSLVCQT*KWKTWLVDIFLKFKKILIATF*NA 600
           N+  L LNI  SL+ +  ++  W  D+FL F    I  F NA
Sbjct: 619 NKYWLDLNILVSLLNRAKEFPKWFEDLFLGFGTPDICAFPNA 660


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 316 DLIIHIVFSLVRGLAPSNLHDLLFSCN 396
           +L++H VF L+ G     LHDL+ + N
Sbjct: 220 ELLLHPVFELLVGTQHEWLHDLVIAMN 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,255
Number of Sequences: 5004
Number of extensions: 60986
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)