Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_E01
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     29   3.9  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   5.1  
07_03_0488 + 18674465-18674873,18675343-18675520,18675932-186760...    29   6.7  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     28   8.9  

>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 614  LTSITKIDAQVRGGETRQDYKDTRRFPPGKLPRC 715
            L  IT +D    GG  R      +R PP +L RC
Sbjct: 1462 LGEITTVDVNETGGGARSSLSFRQRMPPPRLQRC 1495


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 676 RYQAFPPWKAPSLRSPVPDPCXFTGIPVPPFLP 774
           R+   PP   P L +P P P   +  P PP  P
Sbjct: 84  RHHRIPPPPPPLLPTPPPPPASISPTPAPPLPP 116


>07_03_0488 +
           18674465-18674873,18675343-18675520,18675932-18676072,
           18677736-18677856,18678570-18678704,18679380-18679637
          Length = 413

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +1

Query: 697 WKAPSLRSPVPDPCXF--TGIPV-PPFLP 774
           W APS  +PV  P  F   GIPV PP LP
Sbjct: 244 WWAPSKFNPVQSPMLFFEKGIPVIPPLLP 272


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 416 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--EXTCEQKASKRPGTV 571
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,854,512
Number of Sequences: 37544
Number of extensions: 374476
Number of successful extensions: 1021
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)