Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D24
         (872 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.34 
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   7.2  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   7.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   7.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 391  GMNVPSRSFKVATSFTLPFSLASFSSAILVLYCSSVRSPVSRFCLP 254
            G   PS+   V+ S ++P  +ASF       Y   V  P     LP
Sbjct: 1289 GEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLP 1334


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 739 IGSLMNLRYRTVPSFNDI 686
           IGSL  L   TV  FND+
Sbjct: 221 IGSLSQLLSETVALFNDV 238


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 739 IGSLMNLRYRTVPSFNDI 686
           IGSL  L   TV  FND+
Sbjct: 221 IGSLSQLLSETVALFNDV 238


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 598 PSHRSGGDGLQDFTGR 645
           P H   GDG+ DF+ R
Sbjct: 196 PMHSPPGDGILDFSKR 211



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 665  SKTPSPGLPVKSCRPSPPDRCDGMYST 585
            S + S G+P+K     PP    G  ST
Sbjct: 1097 SSSSSEGVPLKGTAVPPPSGSSGPGST 1123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,959
Number of Sequences: 336
Number of extensions: 4016
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)