Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D24
         (872 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.56 
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   7.0  
AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    23   9.2  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 0.56
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 734 ITDESSV*NCSFLQRHRIGMRKRSKTPSPGLPVKSC-RPSP 615
           IT E  + NC       +  R  S +P P LPV+S   PSP
Sbjct: 337 ITPELWMKNCKSCSISPVSDRSESVSPVPSLPVRSSPEPSP 377


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 678 PNPMSLKEGTVLYRRFISDP 737
           P+P+ +KE    ++R+++DP
Sbjct: 842 PHPLLIKEDARCHQRYLADP 861


>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 698 LQRHRIGMRKRSKTPSP 648
           +QRHR  ++KR K P P
Sbjct: 69  IQRHRAILQKRLKIPPP 85


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,360
Number of Sequences: 2352
Number of extensions: 16715
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93439926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)