Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D23
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    30   0.39 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.3  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   8.3  

>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 626 HSDDVHDQSGHDKLLPAMEMEAPISPYRVVTGYRRAHTAGGSDHGYSPM-TPHENXXXRG 802
           H+D V   SG+  +L +   ++ I  +RV TG    H  G S   YS +  P  N    G
Sbjct: 506 HTDSVRTISGYGDILVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPERNICISG 565

Query: 803 SL 808
           S+
Sbjct: 566 SM 567


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 332  HPCLSDTTRTLKRLNKKSATCRSRIENQSKFLNSLQSYKSN 210
            HP  S+  R     N+K A+  S  E+QS   N  +  + N
Sbjct: 922  HPHASEAERAHSYSNRKQASSESSPESQSTHYNDYEGTEDN 962


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 444 SLFM*PYVPSPYGVTAPKTPLKQVD*EVQKGASNVLLPSVSI*HHS 307
           SLF+   VPSP+G +   +  ++V     + + +V LP+ S   HS
Sbjct: 177 SLFVNGDVPSPFGASTASSSSRRVYSVDLRDSGDVQLPNQSTFRHS 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,914
Number of Sequences: 5004
Number of extensions: 68324
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)