Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D23
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    31   0.94 
01_06_0644 + 30821811-30821855,30822707-30822976,30823079-308243...    30   2.9  
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143...    30   2.9  
02_05_0600 - 30273080-30274692,30274709-30274949                       29   5.0  
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106...    29   6.6  
01_06_0820 - 32226661-32226759,32226837-32226938,32227238-322272...    28   8.7  

>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = +2

Query: 524 YCYRQNVTSASCHN*YVDGPAETWHDPDVQMSQLHSDDVHDQSGHDKLLPAMEMEAPISP 703
           Y YR N    S  +  +      W+ P+  +++L+ + V    GHD++LP   +     P
Sbjct: 299 YHYRDNRVLPSHVDAELANAEAWWYKPEYMINELNINSVITTPGHDEVLPINALTTQ-RP 357

Query: 704 YRVVTGYRRAHTAGG 748
           Y  + GY  A++ GG
Sbjct: 358 Y-TMKGY--AYSGGG 369


>01_06_0644 +
           30821811-30821855,30822707-30822976,30823079-30824383,
           30824551-30824692,30824752-30825275
          Length = 761

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 366 EVQKGASNVLLP--SVSI*HHSHPKTPKQEECD 274
           E   G +NV+ P  S+ +  HSH  TP  +ECD
Sbjct: 623 EEDNGFNNVICPCPSLELEEHSHSATPAIDECD 655


>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
            19118884-19118950,19119229-19119284,19119530-19119590,
            19120181-19120297,19120570-19120682,19120774-19120848,
            19121464-19122045,19122056-19122271,19122372-19122497,
            19126152-19126190,19126266-19126360,19126423-19126962,
            19127102-19127327,19127385-19127437,19127534-19127701,
            19128353-19128707,19128785-19128876,19129891-19129993
          Length = 1717

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 366  EVQKGASNVLLP--SVSI*HHSHPKTPKQEECD 274
            E   G +NV+ P  S+ +  HSH  TP  +ECD
Sbjct: 1658 EEDNGFNNVICPCPSLELEEHSHSATPAIDECD 1690


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
 Frame = +2

Query: 272 TSHSSCLGVLGCEWCQIDTDGSSTLLAPFCTSQSTCFNGVLGAVT-------PYGEGTYG 430
           T  S+C   L C  C   T   + L +P  T  S C  G+  AV        P       
Sbjct: 488 TGVSACTAGLLCRRCWASTSSPTGLPSPLPTGVSACTAGLYAAVVGRLRLHRPAASTAAD 547

Query: 431 HMNRDALXGYSAIGPIAGCIV-TVSLIVAVAIYCYR 535
              R  L G+  + P+ G  V T  L  A A +C+R
Sbjct: 548 WCFR--LHGWPIMPPLLGVYVFTDRLAFAAADWCFR 581


>06_03_1333 -
           29410014-29410052,29410071-29410322,29410601-29410633,
           29411035-29411045,29411420-29415325,29415437-29415920
          Length = 1574

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 129 HS*ISELHSQGHSHSVCSIRLQLRHSRKSLKEFPIVXXXW 10
           HS + ELH  GH  + C   L +  S K LK   +    W
Sbjct: 867 HSNLLELHINGHGGATCPSWLGVNLSMKGLKSLRLNCVDW 906


>01_06_0820 -
           32226661-32226759,32226837-32226938,32227238-32227291,
           32227383-32227446,32227798-32228033
          Length = 184

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 707 RVVTGYRRAHTAGGSDHGYSPMTPHE 784
           R++   R A  AGG  HG+ P++ HE
Sbjct: 45  RLLASSRAALAAGGGGHGWVPLSHHE 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,867,604
Number of Sequences: 37544
Number of extensions: 497264
Number of successful extensions: 1201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)