Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D23
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   1.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   5.0  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   5.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   8.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   8.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 230 LQSYKSNATCDCCS 189
           + SYKSN  CD CS
Sbjct: 141 IDSYKSNLKCDKCS 154


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 746 HPQYAPSGTLSLLYTEISEPPF 681
           +P++ P G   L+Y E S PPF
Sbjct: 66  NPEHKPPGPKDLVYLEPS-PPF 86


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 746 HPQYAPSGTLSLLYTEISEPPF 681
           +P++ P G   L+Y E S PPF
Sbjct: 67  NPEHKPPGPKDLVYLEPS-PPF 87


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 568 LIVTASRSYILSVTVYRYRYNQTNSHYATCNRSY 467
           +I + S   I +   Y+Y YN  N +    N +Y
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNY 347


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 636 SSECSWLICTSGSCQVSAGPSTY 568
           SS C  + C  G  ++  GP  Y
Sbjct: 53  SSACGIVQCAKGPDELCGGPQNY 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,638
Number of Sequences: 438
Number of extensions: 5507
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)