Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D22
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.70 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 500  VRLNLWSPGCLQMVCCLXSHPXRCRQQW 583
            + LN WS G   M+  +  H  + +Q+W
Sbjct: 1479 LHLNAWSDGGCPMIYFVVEHKKKNQQEW 1506


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 144 NQRHFVVVDL*RCSLSFEDFSHLFQSRSLEF 52
           N+   V++D  RCS+ +    H F+  ++ F
Sbjct: 199 NKNGSVILDTARCSMKWTLIEHAFEISTMLF 229


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 499 SPPAKRSDE*IDAICN 452
           +PP   ++E +DA+CN
Sbjct: 453 APPQLPTEESVDALCN 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,650
Number of Sequences: 438
Number of extensions: 4247
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)