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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D21
         (829 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B...   224   2e-57
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri...   219   7e-56
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P...   216   5e-55
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ...   186   6e-46
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ...   184   2e-45
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ...   181   2e-44
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ...   179   9e-44
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498...   177   4e-43
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ...   176   5e-43
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;...   169   6e-41
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI...   168   2e-40
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI...   167   2e-40
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ...   167   4e-40
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;...   165   1e-39
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ...   160   4e-38
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|...   152   9e-36
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp...   150   4e-35
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre...   149   1e-34
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol...   147   3e-34
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ...   144   2e-33
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ...   141   2e-32
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na...   138   2e-31
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na...   137   3e-31
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|...   135   1e-30
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|...   135   1e-30
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R...   135   1e-30
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R...   134   2e-30
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or...   130   4e-29
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro...   129   7e-29
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F...   124   2e-27
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob...   123   6e-27
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI...   121   3e-26
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu...   110   5e-23
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N...   102   1e-20
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co...    97   5e-19
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ...    91   2e-17
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa...    88   2e-16
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap...    84   4e-15
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...    82   1e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae...    80   6e-14
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ...    80   8e-14
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th...    75   2e-12
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di...    73   9e-12
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ...    73   9e-12
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri...    72   2e-11
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI...    72   2e-11
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu...    71   4e-11
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B...    71   5e-11
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub...    70   6e-11
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M...    69   1e-10
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=...    69   1e-10
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    69   1e-10
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|...    67   4e-10
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl...    67   4e-10
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c...    65   2e-09
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym...    64   3e-09
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;...    64   5e-09
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4...    63   7e-09
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A...    63   7e-09
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti...    63   9e-09
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ...    62   2e-08
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=...    62   2e-08
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ...    62   2e-08
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl...    61   3e-08
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|...    60   5e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My...    59   1e-07
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver...    57   5e-07
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=...    57   5e-07
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid...    56   1e-06
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit...    55   2e-06
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3....    54   4e-06
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    54   4e-06
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach...    51   3e-05
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype...    51   4e-05
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac...    51   4e-05
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte...    50   7e-05
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh...    49   1e-04
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter...    48   3e-04
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ...    47   5e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela...    47   5e-04
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl...    46   0.001
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni...    46   0.002
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B...    45   0.002
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil...    45   0.002
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;...    44   0.004
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob...    44   0.005
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol...    42   0.019
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D...    41   0.044
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte...    41   0.044
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P...    40   0.058
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri...    40   0.10 
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha...    39   0.18 
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te...    38   0.31 
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O...    38   0.31 
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ...    38   0.41 
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu...    37   0.54 
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium...    36   1.2  
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym...    33   6.6  

>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
           cynthia ricini (Indian eri silkmoth)
          Length = 510

 Score =  224 bits (548), Expect = 2e-57
 Identities = 126/226 (55%), Positives = 140/226 (61%), Gaps = 2/226 (0%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           AELG PGSLIGDDQIYNTIVTAHA                 N LVPL+LGAPD+AFPR+N
Sbjct: 36  AELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMN 95

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
           N+ F              IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS 
Sbjct: 96  NMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSI 155

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             SFDQ+PLFV AVGITAF         AGAIT+LLTDRNLNTS
Sbjct: 156 LGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNTS 215

Query: 693 FFDPAGGGDP-FYINIYXDFWTS*SYIXXYQDWYNSHII-PRKRKK 824
           FFDPAGGGDP  Y +++  F          QD  + H++ P+K +K
Sbjct: 216 FFDPAGGGDPILYQHLFWFFGHPKLMFSFSQDLVSFHMLFPKKVEK 261



 Score = 37.5 bits (83), Expect = 0.41
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 59  YSTNHKDIGTLYFIF 103
           YSTNHKDIGTLYFIF
Sbjct: 5   YSTNHKDIGTLYFIF 19


>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
           Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
           subunit I - Periclimenes thermohydrophilus
          Length = 217

 Score =  219 bits (535), Expect = 7e-56
 Identities = 120/209 (57%), Positives = 138/209 (66%)
 Frame = -1

Query: 721 GSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNRXXX 542
           GSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV  T  TN G  S  I  +R   
Sbjct: 7   GSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVIPADRMLI 66

Query: 541 XXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIR 362
                     I+E PAKC+EKI  STD P CAI   SGG TVHPVP P STI L  + ++
Sbjct: 67  TVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVK 126

Query: 361 EGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSP 182
           EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP            KA AVT+ L I S P
Sbjct: 127 EGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSFP 185

Query: 181 INDPGFPNSARIKSLKDVPIIPDQIPKNK 95
           I  PG PNSARIKSL DVP +P   PK K
Sbjct: 186 IKLPGCPNSARIKSLSDVPTMPAHAPKMK 214


>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
           Panarthropoda|Rep: Cytochrome c oxidase subunit I -
           Pagyris cymothoe
          Length = 487

 Score =  216 bits (528), Expect = 5e-55
 Identities = 116/199 (58%), Positives = 127/199 (63%), Gaps = 1/199 (0%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           ELG PGSLIGDDQIYNTIVTAHA                 N L+PL+LGAPD+AFPR+NN
Sbjct: 13  ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           + F              IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS  
Sbjct: 73  MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                            SFDQ+PLF+ AVGITA          AGAIT+LLTDRNLNTSF
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNTSF 192

Query: 696 FDPAGGGDP-FYINIYXDF 749
           FDPAGGGDP  Y +++  F
Sbjct: 193 FDPAGGGDPILYQHLFWFF 211


>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
           rubiginosus
          Length = 504

 Score =  186 bits (453), Expect = 6e-46
 Identities = 104/200 (52%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           AELG PG+L+GDDQIYN IVTAHA                 N LVPL++GAPD+AFPR+N
Sbjct: 40  AELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMN 99

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
           N+ F               VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHLAGISS 
Sbjct: 100 NMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISSI 159

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             S  Q PLFV +V ITA          A  IT+LLTDRNLNT+
Sbjct: 160 LGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTT 219

Query: 693 FFDPAGGGDP-FYINIYXDF 749
           FFDPAGGGDP  Y +++  F
Sbjct: 220 FFDPAGGGDPILYQHLFWFF 239



 Score = 33.5 bits (73), Expect = 6.6
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 59  YSTNHKDIGTLYFIF 103
           +STNHKDIGTLY IF
Sbjct: 9   FSTNHKDIGTLYLIF 23


>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Homalopoma maculosa
          Length = 219

 Score =  184 bits (448), Expect = 2e-45
 Identities = 98/189 (51%), Positives = 111/189 (58%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           ELG PGS IG+DQ+YN +VTAHA                 N LVPL+LGAPD+AFPR+NN
Sbjct: 23  ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           + F               VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS  
Sbjct: 83  MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                              + + LFV +V ITA          AGAIT+LLTDRN NTSF
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSF 202

Query: 696 FDPAGGGDP 722
           FDPAGGGDP
Sbjct: 203 FDPAGGGDP 211


>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
           root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 516

 Score =  181 bits (441), Expect = 2e-44
 Identities = 100/200 (50%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           AEL  PG+L+GDDQIYN IVTAHA                 N LVPL++GAPD+AFPR+N
Sbjct: 39  AELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMN 98

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
           N+ F               VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS 
Sbjct: 99  NMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSI 158

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             S  Q PLFV AV +TA          A  IT+LLTDRNLNT+
Sbjct: 159 LGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTT 218

Query: 693 FFDPAGGGDP-FYINIYXDF 749
           FFDPAGGGDP  Y +++  F
Sbjct: 219 FFDPAGGGDPILYQHLFWFF 238



 Score = 33.1 bits (72), Expect = 8.7
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 59  YSTNHKDIGTLYFIF 103
           +STNHKDIGTLY +F
Sbjct: 8   FSTNHKDIGTLYLVF 22


>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Ophisurus macrorhynchos
          Length = 546

 Score =  179 bits (435), Expect = 9e-44
 Identities = 98/200 (49%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           AEL  PG+L+GDDQIYN IVTAHA                 N LVPL++GAPD+AFPR+N
Sbjct: 39  AELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMN 98

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
           N+ F               VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS 
Sbjct: 99  NMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSI 158

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             +  Q PLFV +V +TA          A  IT+LLTDRNLNT+
Sbjct: 159 LGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTT 218

Query: 693 FFDPAGGGDP-FYINIYXDF 749
           FFDPAGGGDP  Y +++  F
Sbjct: 219 FFDPAGGGDPILYQHLFWFF 238



 Score = 33.1 bits (72), Expect = 8.7
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 59  YSTNHKDIGTLYFIF 103
           +STNHKDIGTLY +F
Sbjct: 8   FSTNHKDIGTLYLVF 22


>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
           root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
           (Human)
          Length = 513

 Score =  177 bits (430), Expect = 4e-43
 Identities = 97/200 (48%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           AELG PG+L+G+D IYN IVTAHA                 N LVPL++GAPD+AFPR+N
Sbjct: 39  AELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMN 98

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
           N+ F              +VE GAGTG TVYPPL+ N +H G SVDL IFSLHLAG+SS 
Sbjct: 99  NMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSI 158

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             +  Q PLFV +V ITA          A  IT+LLTDRNLNT+
Sbjct: 159 LGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTT 218

Query: 693 FFDPAGGGDP-FYINIYXDF 749
           FFDPAGGGDP  Y +++  F
Sbjct: 219 FFDPAGGGDPILYQHLFWFF 238


>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Placozoan sp. BZ2423
          Length = 498

 Score =  176 bits (429), Expect = 5e-43
 Identities = 95/199 (47%), Positives = 116/199 (58%), Gaps = 1/199 (0%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           EL +PGS++GDD +YN IVTAHA                 N  VPL++GAPD+AFPR+NN
Sbjct: 41  ELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNN 100

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           I F              +VE GAGTG TVYPPL+S  AH G SVD+AIFSLHLAG+SS  
Sbjct: 101 ISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSIL 160

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                            +  ++PLFV +V ITA          AGAIT+LLTDR  NT+F
Sbjct: 161 GAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLTDRYFNTTF 220

Query: 696 FDPAGGGDP-FYINIYXDF 749
           FDPAGGGDP  Y +++  F
Sbjct: 221 FDPAGGGDPILYQHLFWFF 239


>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
           melitaearum (Parasitoid wasp)
          Length = 499

 Score =  169 bits (412), Expect = 6e-41
 Identities = 92/199 (46%), Positives = 114/199 (57%), Gaps = 1/199 (0%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           ELG PGSLIG+DQIYN+IVT+HA                 N L+PL+LG+PD++FPR+NN
Sbjct: 24  ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           + F               +  G GTG TVYPPLS  + H G SVDL IFSLHLAG SS  
Sbjct: 84  MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                            + D++ LF  +V ITA          AGAIT+LLTDRN+NTSF
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNTSF 203

Query: 696 FDPAGGGDP-FYINIYXDF 749
           FDP+GGGDP  Y +++  F
Sbjct: 204 FDPSGGGDPILYQHLFWFF 222


>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI8 (EC
           3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
           endonuclease aI8 precursor [Contains: Truncated
           non-functional cytochrome oxidase 1; Intron-encoded
           endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
           fungus)
          Length = 645

 Score =  168 bits (408), Expect = 2e-40
 Identities = 95/201 (47%), Positives = 113/201 (56%), Gaps = 3/201 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PG   L GD Q+YN I+TAHA                 N LVP+++GAPD+AFPR+
Sbjct: 38  ELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRL 97

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NNI F               VE GAGTG TVYPPLS   +H G SVDLAIFSLHL+GISS
Sbjct: 98  NNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISS 157

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              +  +LPLFV A+ +TA          AGAIT+LLTDRN NT
Sbjct: 158 MLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNT 217

Query: 690 SFFDPAGGGDP-FYINIYXDF 749
           SF+DPAGGGDP  Y +++  F
Sbjct: 218 SFYDPAGGGDPILYQHLFWFF 238


>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI5 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI5 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 536

 Score =  167 bits (407), Expect = 2e-40
 Identities = 93/191 (48%), Positives = 108/191 (56%), Gaps = 2/191 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PG   L GD Q+YN I+TAHA                 N LVP+++GAPD+AFPR+
Sbjct: 38  ELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRL 97

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NNI F               VE GAGTG TVYPPLS   +H G SVDLAIFSLHL+GISS
Sbjct: 98  NNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISS 157

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              +  +LPLFV A+ +TA          AGAIT+LLTDRN NT
Sbjct: 158 MLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNT 217

Query: 690 SFFDPAGGGDP 722
           SF+DPAGGGDP
Sbjct: 218 SFYDPAGGGDP 228


>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
           cellular organisms|Rep: Cytochrome c oxidase subunit I -
           Pandaka lidwilli
          Length = 507

 Score =  167 bits (405), Expect = 4e-40
 Identities = 92/184 (50%), Positives = 105/184 (57%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           AEL  PG+L+GDDQIYN IVTAHA                 N L+PL++GAPD+AFPR+N
Sbjct: 28  AELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMN 87

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
           N+ F               +E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAGISS 
Sbjct: 88  NMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSI 147

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             S  Q PLFV AV ITA          A  IT+LLTDRNLNT+
Sbjct: 148 LGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTT 207

Query: 693 FFDP 704
           FFDP
Sbjct: 208 FFDP 211


>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 527

 Score =  165 bits (401), Expect = 1e-39
 Identities = 90/201 (44%), Positives = 114/201 (56%), Gaps = 3/201 (1%)
 Frame = +3

Query: 156 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PG  I  G+ Q+YN ++TAHA                 N  VP+++GAPD+AFPR+
Sbjct: 41  ELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRL 100

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NNI F              +VE G+GTG TVYPPLS   +H G +VDLAIFSLHL+G+SS
Sbjct: 101 NNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGVSS 160

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              +  +LPLFV +V +TAF         AGAIT+LLTDRN NT
Sbjct: 161 ILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNT 220

Query: 690 SFFDPAGGGDP-FYINIYXDF 749
           +FFDPAGGGDP  Y +++  F
Sbjct: 221 TFFDPAGGGDPILYQHLFWFF 241



 Score = 35.9 bits (79), Expect = 1.2
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +2

Query: 59  YSTNHKDIGTLYFIF 103
           +STNHKDIGTLYFIF
Sbjct: 9   FSTNHKDIGTLYFIF 23


>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Chondrus crispus (Carragheen)
          Length = 532

 Score =  160 bits (388), Expect = 4e-38
 Identities = 94/227 (41%), Positives = 123/227 (54%), Gaps = 4/227 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  P +  L+G+ QIYN ++TAHA                 N LVP+++G+PD+AFPR+
Sbjct: 46  ELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRL 105

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NNI F              +VE G GTG TVYPPLSS  +H G +VDLAIFSLH++G SS
Sbjct: 106 NNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISGASS 165

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              S  ++PLFV ++ +TAF         AGAIT+LLTDRN NT
Sbjct: 166 ILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLLTDRNFNT 225

Query: 690 SFFDPAGGGDP-FYINIYXDFWTS*SYIXXYQDW-YNSHIIPRKRKK 824
           SFFD +GGGDP  Y +++  F     YI     +   SHI+    +K
Sbjct: 226 SFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVSTFSRK 272



 Score = 33.5 bits (73), Expect = 6.6
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 59  YSTNHKDIGTLYFIF 103
           +STNHKDIGTLY IF
Sbjct: 14  FSTNHKDIGTLYLIF 28


>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
           group|Rep: Endonuclease - Saccharomyces servazzii
           (Yeast)
          Length = 675

 Score =  152 bits (369), Expect = 9e-36
 Identities = 95/227 (41%), Positives = 118/227 (51%), Gaps = 4/227 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PGS  L G+ Q++N +V  HA                 N ++PL++GA D++FPRI
Sbjct: 39  ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFPRI 98

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           N+I F              +VE+GAGTG TVYPPLSS  AH G SVDLAIFSLHL  ISS
Sbjct: 99  NSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISS 158

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              S  ++PLFV A+ ITAF         +  IT+LL DRN NT
Sbjct: 159 LLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITMLLMDRNFNT 218

Query: 690 SFFDPAGGGDP-FYINIYXDFWTS*SYIXXYQDW-YNSHIIPRKRKK 824
           SFF+ AGGGDP FY + +  F     YI     +   SHI+    KK
Sbjct: 219 SFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIVSHIVSTYSKK 265


>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
           precursor (DNA endonuclease I-SceIV) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
           endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
           endonuclease I-SceIV) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
           SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
          Length = 630

 Score =  150 bits (364), Expect = 4e-35
 Identities = 93/227 (40%), Positives = 117/227 (51%), Gaps = 4/227 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PGS  L G+ Q++N +V  HA                 N L+PL++GA D AFPRI
Sbjct: 39  ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRI 98

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NNI F              +VE+GAGTG TVYPPLSS  AH G SVDLAIF+LHL  ISS
Sbjct: 99  NNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISS 158

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              +  +LPLFV ++ ITAF         +  IT+LL DRN NT
Sbjct: 159 LLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNT 218

Query: 690 SFFDPAGGGDP-FYINIYXDFWTS*SYIXXYQDW-YNSHIIPRKRKK 824
           SFF+ +GGGDP  Y +++  F     YI     +   SH++    KK
Sbjct: 219 SFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISHVVSTYSKK 265


>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
           precursor (DNA endonuclease I- SceII) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
           endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI4 precursor (DNA
           endonuclease I- SceII) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 556

 Score =  149 bits (360), Expect = 1e-34
 Identities = 87/201 (43%), Positives = 108/201 (53%), Gaps = 3/201 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PGS  L G+ Q++N +V  HA                 N L+PL++GA D AFPRI
Sbjct: 39  ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRI 98

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NNI F              +VE+GAGTG TVYPPLSS  AH G SVDLAIF+LHL  ISS
Sbjct: 99  NNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISS 158

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              +  +LPLFV ++ ITAF         +  IT+LL DRN NT
Sbjct: 159 LLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNT 218

Query: 690 SFFDPAGGGDP-FYINIYXDF 749
           SFF+ +GGGDP  Y +++  F
Sbjct: 219 SFFEVSGGGDPILYEHLFWFF 239


>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
           polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
           Cytochrome oxidase subunits 1 and 2 polyprotein -
           Phaeosphaeria nodorum SN15
          Length = 789

 Score =  147 bits (357), Expect = 3e-34
 Identities = 86/200 (43%), Positives = 105/200 (52%), Gaps = 2/200 (1%)
 Frame = +3

Query: 156 ELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           EL  PG   I D+Q+YN+I+TAHA                 N L+PL LG PD+ FPR+N
Sbjct: 40  ELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGFPRLN 99

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
           NI +               +ENG GTG T+YPPLS   +H G SVDLAIF LHL+GISS 
Sbjct: 100 NISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSGISSL 159

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                                +L LF  AV ITA          AG IT++LTDRN NTS
Sbjct: 160 LGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVLTDRNFNTS 219

Query: 693 FFDPAGGGDP-FYINIYXDF 749
           FF+ AGGGDP  Y +++  F
Sbjct: 220 FFEVAGGGDPILYQHLFWFF 239


>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
           n=1; Saccharomyces castellii|Rep: I-SceII DNA
           endonuclease-like protein - Saccharomyces castellii
           (Yeast)
          Length = 598

 Score =  144 bits (350), Expect = 2e-33
 Identities = 84/204 (41%), Positives = 109/204 (53%), Gaps = 3/204 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PG   L G++Q++N +V  HA                 N ++PL++GA D AFPRI
Sbjct: 39  ELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFPRI 98

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NNI F              +VE+GAGTG TVYPPL+S  AH G SVDLAIF+LH+  ISS
Sbjct: 99  NNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSISS 158

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              +  +LPLFV A+ ITA          +  +T+LL DRN NT
Sbjct: 159 LLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTMLLLDRNFNT 218

Query: 690 SFFDPAGGGDP-FYINIYXDFWTS 758
           SFF+ AGGGDP  Y +++  F T+
Sbjct: 219 SFFEVAGGGDPILYEHLFWFFGTT 242


>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Paracoccidioides brasiliensis
          Length = 710

 Score =  141 bits (341), Expect = 2e-32
 Identities = 78/189 (41%), Positives = 99/189 (52%), Gaps = 1/189 (0%)
 Frame = +3

Query: 156 ELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           EL  PG   I D+Q+YN+I+T+H                  N L+P+++G PD+AFPR+N
Sbjct: 66  ELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPRLN 125

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
           N+ +              I+ENG GTG T+YPPLS   +H    VDL IF LHL+GISS 
Sbjct: 126 NVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSGISSL 185

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                                +L LF  AV ITA          A AIT+LLTDRNLNTS
Sbjct: 186 LGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLLTDRNLNTS 245

Query: 693 FFDPAGGGD 719
           F++ AGGGD
Sbjct: 246 FYELAGGGD 254


>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
           Naegleria gruberi
          Length = 633

 Score =  138 bits (334), Expect = 2e-31
 Identities = 88/227 (38%), Positives = 105/227 (46%), Gaps = 4/227 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PG   L G+   YN I T H                  N  VP+++GAPD++FPR+
Sbjct: 42  ELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFPRL 101

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NN  F                E G GTG TVYPPLSS  +H G SVDL IFS HL GI S
Sbjct: 102 NNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGS 161

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                                  LPLFV +V +T+F         A AIT+LL DRN NT
Sbjct: 162 IVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLLFDRNFNT 221

Query: 690 SFFDPAGGGD-PFYINIYXDFWTS*SYIXXYQDW-YNSHIIPRKRKK 824
           SF+DP GGGD   Y +++  F     YI     +   SHII    KK
Sbjct: 222 SFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLVSHIIATFSKK 268


>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
           Naupactini|Rep: Cytochrome c oxidase subunit I -
           Galapaganus collaris
          Length = 406

 Score =  137 bits (332), Expect = 3e-31
 Identities = 77/144 (53%), Positives = 86/144 (59%)
 Frame = +3

Query: 291 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 470
           L LGAPD  FPR  N+ F               VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4   LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63

Query: 471 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 650
           LAIFSLH+AG+ S                   +  ++PLFV AV ITA          AG
Sbjct: 64  LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123

Query: 651 AITILLTDRNLNTSFFDPAGGGDP 722
           AIT+LLTDRN+NTSFFDPAGGGDP
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDP 147


>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
           stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
          Length = 763

 Score =  135 bits (327), Expect = 1e-30
 Identities = 75/196 (38%), Positives = 104/196 (53%), Gaps = 1/196 (0%)
 Frame = +3

Query: 165 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 344
           NP  L+ + Q++N ++TAHA                 N LVPL +G+ D AFPRINN+ F
Sbjct: 61  NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120

Query: 345 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 524
                         +++ G G+G T+YPPL+S  +H G S+D+AIF+LHL+G+SS     
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180

Query: 525 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 704
                          + +LPLFV +V ITA          A  +T+LL DRN NTSFF  
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240

Query: 705 AGGGDP-FYINIYXDF 749
           +GGGDP  Y +I+  F
Sbjct: 241 SGGGDPLLYEHIFWFF 256


>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
           stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
          Length = 676

 Score =  135 bits (327), Expect = 1e-30
 Identities = 75/196 (38%), Positives = 104/196 (53%), Gaps = 1/196 (0%)
 Frame = +3

Query: 165 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 344
           NP  L+ + Q++N ++TAHA                 N LVPL +G+ D AFPRINN+ F
Sbjct: 61  NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120

Query: 345 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 524
                         +++ G G+G T+YPPL+S  +H G S+D+AIF+LHL+G+SS     
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180

Query: 525 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 704
                          + +LPLFV +V ITA          A  +T+LL DRN NTSFF  
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240

Query: 705 AGGGDP-FYINIYXDF 749
           +GGGDP  Y +I+  F
Sbjct: 241 SGGGDPLLYEHIFWFF 256


>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
           Cox-i3 protein - Candida stellata (Yeast)
          Length = 588

 Score =  135 bits (327), Expect = 1e-30
 Identities = 75/196 (38%), Positives = 104/196 (53%), Gaps = 1/196 (0%)
 Frame = +3

Query: 165 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 344
           NP  L+ + Q++N ++TAHA                 N LVPL +G+ D AFPRINN+ F
Sbjct: 61  NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120

Query: 345 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 524
                         +++ G G+G T+YPPL+S  +H G S+D+AIF+LHL+G+SS     
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180

Query: 525 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 704
                          + +LPLFV +V ITA          A  +T+LL DRN NTSFF  
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240

Query: 705 AGGGDP-FYINIYXDF 749
           +GGGDP  Y +I+  F
Sbjct: 241 SGGGDPLLYEHIFWFF 256


>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
           Cox-i2 protein - Candida stellata (Yeast)
          Length = 586

 Score =  134 bits (325), Expect = 2e-30
 Identities = 74/193 (38%), Positives = 103/193 (53%), Gaps = 1/193 (0%)
 Frame = +3

Query: 165 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 344
           NP  L+ + Q++N ++TAHA                 N LVPL +G+ D AFPRINN+ F
Sbjct: 61  NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120

Query: 345 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 524
                         +++ G G+G T+YPPL+S  +H G S+D+AIF+LHL+G+SS     
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180

Query: 525 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 704
                          + +LPLFV +V ITA          A  +T+LL DRN NTSFF  
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240

Query: 705 AGGGDP-FYINIY 740
           +GGGDP  Y +I+
Sbjct: 241 SGGGDPLLYEHIF 253


>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
           organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
           (strain CCS1)
          Length = 628

 Score =  130 bits (314), Expect = 4e-29
 Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 4/228 (1%)
 Frame = +3

Query: 153 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 326
           A LG    L G  D  ++N ++T H                  N  +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202

Query: 327 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 506
           +NN+ +              +++ GAG G T YPP+S+      R+VD AIF++H++G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262

Query: 507 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 686
           S                   +  ++PLF  +V +TA+         AGAIT+LLTDRN  
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFG 322

Query: 687 TSFFDPAGGGDP-FYINIYXDFWTS*SYIXXYQDW-YNSHIIPRKRKK 824
           T+FFDPAGGGDP  + +I+  F     YI     +   SHI+    KK
Sbjct: 323 TTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVISHIVATFSKK 370


>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
           group|Rep: COX1-i5 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 608

 Score =  129 bits (312), Expect = 7e-29
 Identities = 77/190 (40%), Positives = 97/190 (51%), Gaps = 2/190 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL N GS  L G+ Q +N ++TAHA                 N L+PL+LGA D+AF R+
Sbjct: 44  ELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARL 103

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NNI F              +VE GAGTG TVY PL+   +H G +VDLAIFSLHL+G SS
Sbjct: 104 NNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSS 163

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                               ++ +PLF  AV  TA          A  +T+ + DRN NT
Sbjct: 164 LLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNFNT 223

Query: 690 SFFDPAGGGD 719
           SFF+ AGGGD
Sbjct: 224 SFFEYAGGGD 233


>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Trichoderma reesei (Hypocrea jecorina)
          Length = 635

 Score =  124 bits (300), Expect = 2e-27
 Identities = 77/194 (39%), Positives = 98/194 (50%), Gaps = 5/194 (2%)
 Frame = +3

Query: 156 ELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           EL  PG   I ++Q+YN+I+TAHA                 N L+PL++G PD+AFPR+N
Sbjct: 68  ELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAFPRLN 127

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIFSLHLAG 500
           NI F              I+E G GTG T+    YPPLS   +H G SVDLAIF+LHL+G
Sbjct: 128 NISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFALHLSG 187

Query: 501 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 680
           +SS                      +L LF  A   +              IT++LTDRN
Sbjct: 188 VSSLLGSINFITTVANMRTPGIKLHKLALFGWATWSSRSRYFL-------GITMVLTDRN 240

Query: 681 LNTSFFDPAGGGDP 722
            NTSFF+ AGGGDP
Sbjct: 241 FNTSFFEVAGGGDP 254


>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
           Alphaproteobacteria|Rep: Cytochrome-c oxidase -
           Sphingomonas sp. SKA58
          Length = 556

 Score =  123 bits (296), Expect = 6e-27
 Identities = 73/190 (38%), Positives = 98/190 (51%), Gaps = 5/190 (2%)
 Frame = +3

Query: 195 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 374
           ++N ++TAH                  N  VP+++GAPD+AFPR+NNI F          
Sbjct: 93  LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152

Query: 375 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 542
                V     NGAGTG TVY PLS++    G +VD+AI SLH+AG SS           
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211

Query: 543 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 722
                   +  ++PLFV +V +TAF         A AIT+LLTDRN  T+F+D AGGGDP
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDP 271

Query: 723 -FYINIYXDF 749
             Y +++  F
Sbjct: 272 ELYQHLFWFF 281


>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI4 (EC
           3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
           intron-encoded endonuclease aI4 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 530

 Score =  121 bits (291), Expect = 3e-26
 Identities = 72/167 (43%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PG   L GD Q+YN I+TAHA                 N LVP+++GAPD+AFPR+
Sbjct: 38  ELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRL 97

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           NNI F               VE GAGTG TVYPPLS   +H G SVDLAIFSLHL+GISS
Sbjct: 98  NNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISS 157

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 650
                              +  +LPLFV A+ +TA          AG
Sbjct: 158 MLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204


>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
           Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
           Leishmania tarentolae (Sauroleishmania tarentolae)
          Length = 549

 Score =  110 bits (264), Expect = 5e-23
 Identities = 61/183 (33%), Positives = 81/183 (44%)
 Frame = +3

Query: 171 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 350
           G L GD Q YN ++T+H                  N  +P++ G PD+ FPR+NN+ F  
Sbjct: 48  GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107

Query: 351 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 530
                       + E G G G T+YP L     H   + D  +F++HL GISS       
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167

Query: 531 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG 710
                       SF    LF+ A  ITA          AG +T++L DRN NTSF+D  G
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVG 227

Query: 711 GGD 719
           GGD
Sbjct: 228 GGD 230


>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
           Nematoda|Rep: Cytochrome c oxidase subunit I -
           Onchocerca volvulus
          Length = 548

 Score =  102 bits (245), Expect = 1e-20
 Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 3/201 (1%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL +PG     G  Q+YN+++T H                  N ++PL+LGAP++AFPR+
Sbjct: 49  ELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRV 108

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           N + F               +  G G+  T YPPLS        S+D  I  LH  GI S
Sbjct: 109 NALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGLHTVGIGS 167

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              + DQ+ +FV    +T+F         AG++  LL DRN NT
Sbjct: 168 LLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLLLDRNFNT 227

Query: 690 SFFDPAGGGDP-FYINIYXDF 749
           SF+D   GG+P  Y +++  F
Sbjct: 228 SFYDTKKGGNPLLYQHLFWFF 248


>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
           unguis
          Length = 573

 Score = 97.1 bits (231), Expect = 5e-19
 Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 1/190 (0%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           EL +PG  +    +Y++I+T HA                 N  +PL++   D++ PR+NN
Sbjct: 42  ELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRLNN 101

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           +                +   G G G T+YPPLS++    G  +DLA+FSLH+AG+SS  
Sbjct: 102 LSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSSIA 161

Query: 516 XXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             F  L P+ +  +  T+          A  +T+LL DR+ +TS
Sbjct: 162 GSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHFSTS 221

Query: 693 FFDPAGGGDP 722
           F+ P GGGDP
Sbjct: 222 FYYPEGGGDP 231


>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
           borealis
          Length = 513

 Score = 91.5 bits (217), Expect = 2e-17
 Identities = 49/95 (51%), Positives = 57/95 (60%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           AELG PG+L+GDDQ  N IVTAHA                 N LVPL++GAPD+AFPR+N
Sbjct: 40  AELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMN 99

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 437
           N+ F               VE GAGTG TVYPPL+
Sbjct: 100 NMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134


>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
           Watasenia scintillans|Rep: Cytochrome c oxidase subunit
           I - Watasenia scintillans (Sparkling enope)
          Length = 217

 Score = 88.2 bits (209), Expect = 2e-16
 Identities = 51/118 (43%), Positives = 61/118 (51%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           ELG PGSL+ DDQ+YN +VTAH                  N LVPL+LGAPD+AFPR+NN
Sbjct: 24  ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           + F              +   G      +  PL       G SVDLAIF LHLAG+SS
Sbjct: 84  MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139


>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
           Aplidium nordmanni
          Length = 227

 Score = 84.2 bits (199), Expect = 4e-15
 Identities = 67/197 (34%), Positives = 79/197 (40%)
 Frame = +3

Query: 159 LGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 338
           L   G +IG  QI    VTA A                   L PL +GAP +A PR+ N+
Sbjct: 31  LSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAXPRLXNM 90

Query: 339 RFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXX 518
            F               +  G G    VYPP SS +AH   +VDL IF LHLAGISS   
Sbjct: 91  SFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAGISSXLG 150

Query: 519 XXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 698
                           ++    LF                  A AIT+L   R  N SFF
Sbjct: 151 SMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRXXNXSFF 210

Query: 699 DPAGGGDPFYINIYXDF 749
            P   G P     +  F
Sbjct: 211 XPXXXGXPXXFPTFFXF 227


>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 485

 Score = 82.2 bits (194), Expect = 1e-14
 Identities = 58/192 (30%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
 Frame = +3

Query: 168 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 347
           PG  + D + YN ++T H                  N L+PL++GA D+AFPR+N + + 
Sbjct: 2   PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61

Query: 348 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 527
                        I  N   T  T YPP S N  +      L +F +HL G SS      
Sbjct: 62  AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119

Query: 528 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 707
                        +F +  LFV  +              AGA+T+L  D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179

Query: 708 GGGDP-FYINIY 740
            GGDP  Y NI+
Sbjct: 180 KGGDPLIYQNIF 191


>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
           cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
           cretinus
          Length = 153

 Score = 80.2 bits (189), Expect = 6e-14
 Identities = 39/65 (60%), Positives = 45/65 (69%)
 Frame = +3

Query: 291 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 470
           L+LGAPD+AFPR+NN+ F              +VENGAGTG TVYPPLSS  AH G SVD
Sbjct: 1   LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60

Query: 471 LAIFS 485
           LAI+S
Sbjct: 61  LAIYS 65



 Score = 40.7 bits (91), Expect = 0.044
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = +2

Query: 590 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRP 721
           CM C +Y        TCFS S+Y IIN  K KY IF   W   P
Sbjct: 97  CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSP 140


>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
           Alveolata|Rep: Cytochrome c oxidase subunit 1 -
           Plasmodium falciparum
          Length = 476

 Score = 79.8 bits (188), Expect = 8e-14
 Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 2/187 (1%)
 Frame = +3

Query: 195 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 374
           +YN I T H                  N  +P++ G+P++A+PRIN+I            
Sbjct: 58  LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117

Query: 375 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 551
                 E G GTG T+YPPLS+++      +VD+ IF L ++G++S              
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177

Query: 552 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP-FY 728
                +   L +   ++ IT+           G + +LL+D + NT FFDP   GDP  Y
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILY 237

Query: 729 INIYXDF 749
            +++  F
Sbjct: 238 QHLFWFF 244


>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
           Theileria|Rep: Cytochrome c oxidase subunit 1 -
           Theileria parva
          Length = 481

 Score = 75.4 bits (177), Expect = 2e-12
 Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 1/187 (0%)
 Frame = +3

Query: 192 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 371
           +IYN + T H                  N L P++LG  D+ +PR+N             
Sbjct: 60  EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119

Query: 372 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 551
                 +E G+GTG T+YPPLS+++++ G  +D  IF L  AGI+S              
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177

Query: 552 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP-FY 728
                  D++     ++ +T+F              ++  DR+ NT FF+ +  GDP  Y
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLY 237

Query: 729 INIYXDF 749
            +++  F
Sbjct: 238 QHLFWFF 244


>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
           Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
           Dicyema misakiense
          Length = 473

 Score = 72.9 bits (171), Expect = 9e-12
 Identities = 58/199 (29%), Positives = 84/199 (42%), Gaps = 1/199 (0%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           +L  P  L  D  +YN  VT H                  N L+P     PD+ FPR+N 
Sbjct: 37  QLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNA 94

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           + F              ++ + A  G T YPPLSS       SV+ ++FSLHLAGI+S  
Sbjct: 95  LSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIASLI 145

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                             +  L LF  ++ + +          A  IT++LTD++L T F
Sbjct: 146 SSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKHLGTCF 203

Query: 696 FDPAGGGDP-FYINIYXDF 749
           +D   GGDP  Y +++  F
Sbjct: 204 YDATMGGDPLLYQHLFWFF 222


>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Schistosoma mansoni (Blood fluke)
          Length = 609

 Score = 72.9 bits (171), Expect = 9e-12
 Identities = 54/176 (30%), Positives = 71/176 (40%)
 Frame = +3

Query: 195 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 374
           +YN +VT H                  N  +P+ L   D+  PR+N++            
Sbjct: 151 VYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYM 210

Query: 375 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 554
                   G G G T+YPPLS      G  VD  +FSLHLAG+SS               
Sbjct: 211 ELSLYY--GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRL 267

Query: 555 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 722
               S     + V A   T+          A  IT+LL DRN  T+FF+P+GGGDP
Sbjct: 268 SFNCS-----IIVWAYLFTSVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDP 318


>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
           Cystobacterineae|Rep: Cytochrome-c oxidase -
           Anaeromyxobacter sp. Fw109-5
          Length = 596

 Score = 71.7 bits (168), Expect = 2e-11
 Identities = 54/204 (26%), Positives = 78/204 (38%), Gaps = 7/204 (3%)
 Frame = +3

Query: 198 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 377
           Y  I T H                  N L+PL++GA D+AFPR+N   F           
Sbjct: 86  YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145

Query: 378 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 554
                  G AG G T Y PLS+N+   G    L + ++ + G+SS               
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205

Query: 555 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGD 719
               ++ +LPL +  + +TA            A  +LL DR+  T FF        GGGD
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265

Query: 720 P-FYINIYXDFWTS*SYIXXYQDW 788
           P  + +++  F     YI     W
Sbjct: 266 PILWQHLFWIFGHPEVYIMILPAW 289


>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI2 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI2 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 533

 Score = 71.7 bits (168), Expect = 2e-11
 Identities = 43/99 (43%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PG   L GD Q+YN I+TAHA                 N LVP+++GAPD+AFPR+
Sbjct: 38  ELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRL 97

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 446
           NNI F               VE GAGTG TV   LS  I
Sbjct: 98  NNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136


>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
           1 - Munidopsis verrucosus
          Length = 154

 Score = 70.9 bits (166), Expect = 4e-11
 Identities = 39/83 (46%), Positives = 48/83 (57%)
 Frame = +3

Query: 429 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 608
           PL+S+IAH G SVD+AIFSLHLAG+SS                   + D++PLF+ AV I
Sbjct: 72  PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131

Query: 609 TAFXXXXXXXXXAGAITILLTDR 677
           T           AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154



 Score = 35.1 bits (77), Expect = 2.2
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +2

Query: 263 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 388
           W IWKL             P NK YKILT  PL Y    K+N
Sbjct: 28  WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69


>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
           Bacteria|Rep: Cytochrome c oxidase subunit I -
           Synechococcus sp. (strain CC9311)
          Length = 564

 Score = 70.5 bits (165), Expect = 5e-11
 Identities = 55/202 (27%), Positives = 78/202 (38%), Gaps = 3/202 (1%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           EL  P + + D  +YN + T H                  N L+P ++GAPD+AFP++N 
Sbjct: 64  ELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKLNA 122

Query: 336 IRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAGIS 506
             F                  G A +G   YPP+S  + + H      L I ++ L+GIS
Sbjct: 123 AAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSGIS 182

Query: 507 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 686
           S                    F ++P+FV                  G   +LL D +  
Sbjct: 183 SIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVMLLFDLSFG 242

Query: 687 TSFFDPAGGGDPFYINIYXDFW 752
           TSFF P GGGDP     +  FW
Sbjct: 243 TSFFRPEGGGDPVLFQHF--FW 262


>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
           subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
           terminal oxidase, subunit I - Haloquadratum walsbyi
           (strain DSM 16790)
          Length = 634

 Score = 70.1 bits (164), Expect = 6e-11
 Identities = 60/194 (30%), Positives = 82/194 (42%), Gaps = 8/194 (4%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           EL +PG  +  +  YN+++T+H                  N L+PL++GA D+AFPRIN 
Sbjct: 122 ELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAFPRINA 180

Query: 336 IRF--XXXXXXXXXXXXXXIVE-NGAGTG*TVYPPLS-----SNIAHRGRSVDLAIFSLH 491
           I F                I E   A TG T+Y PLS      N A+ G  VDL +  LH
Sbjct: 181 IAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLMLLGLH 238

Query: 492 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 671
           L+G+S+                   S+  L +F   +   +            AI +LL 
Sbjct: 239 LSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAIMMLLF 298

Query: 672 DRNLNTSFFDPAGG 713
           DRN  TSFF   GG
Sbjct: 299 DRNFGTSFFAGEGG 312


>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
           Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
           subunit I - Myxococcus xanthus (strain DK 1622)
          Length = 556

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 55/190 (28%), Positives = 75/190 (39%), Gaps = 1/190 (0%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           EL  PG  I D   YN   T H                  N ++PL+LGA D+AFPR+N 
Sbjct: 70  ELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNL 129

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           +                ++  G  TG T Y P S   AH   +V   +F   + G SS  
Sbjct: 130 LSL-YIYLAGAVLALWGMLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIGFSSIV 185

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL-NTS 692
                            ++ ++PLFV A+  T+           G + +L+T  NL    
Sbjct: 186 TGINFIVTCHTMRAPGITWFKMPLFVWAIYATS-CIQVLATPVIGLLLVLVTVENLFGFG 244

Query: 693 FFDPAGGGDP 722
            FDPA GGDP
Sbjct: 245 MFDPARGGDP 254


>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
           Bacteria|Rep: Cytochrome c oxidase subunit I type -
           Anaeromyxobacter sp. Fw109-5
          Length = 555

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 53/199 (26%), Positives = 77/199 (38%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           EL  PG  I D   YN + T H                  N L+P+++GA D+AFP++N 
Sbjct: 63  ELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNL 122

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           + F              +V+ GA TG T Y P S+    +   V L  F L   G SS  
Sbjct: 123 LSF-YVYLAGAVVALFGMVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---GFSSIL 178

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                             + +LPLFV ++  T+            ++ ++  +       
Sbjct: 179 TGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGWGI 238

Query: 696 FDPAGGGDPFYINIYXDFW 752
           FDPA GGDP     +  FW
Sbjct: 239 FDPARGGDPVLFQHF--FW 255


>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
           n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
           Synechocystis sp. (strain PCC 6803)
          Length = 551

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 55/189 (29%), Positives = 72/189 (38%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           EL  P       ++YN ++T H                  N L+PL++G  D+AFPR+N 
Sbjct: 55  ELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNA 113

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           + F               V      G T YPPLS      G   +L I SL L G SS  
Sbjct: 114 VAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTSSIL 170

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                                +PLF  A+  T+          A A+ +L  D    TSF
Sbjct: 171 GAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAGTSF 230

Query: 696 FDPAGGGDP 722
           F+P GGGDP
Sbjct: 231 FNPVGGGDP 239


>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
           Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
           maris DSM 8797
          Length = 754

 Score = 67.3 bits (157), Expect = 4e-10
 Identities = 52/199 (26%), Positives = 75/199 (37%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           +L  P +     +++N + T H                  N  VPL++GA D+AFPR+N+
Sbjct: 60  QLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIGARDVAFPRLNS 118

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
             F              +  +    G   Y PLSS      + VD  I  L + GI S  
Sbjct: 119 FGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWIIGLLIMGIGSVS 178

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                            S  ++PLFV  + + A            A+ +LL DR L ++F
Sbjct: 179 GAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAMLLIDRWLGSAF 238

Query: 696 FDPAGGGDPFYINIYXDFW 752
           FDP  GG       Y  FW
Sbjct: 239 FDPTRGGSAVLWQHY--FW 255


>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
           gracilis|Rep: Cytochrome oxidase subunit I - Euglena
           gracilis
          Length = 495

 Score = 67.3 bits (157), Expect = 4e-10
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 3/188 (1%)
 Frame = +3

Query: 195 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 374
           IYN  +T H                  N L+P+++G  +++ PR+N I F          
Sbjct: 63  IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIF 122

Query: 375 XXXXI-VENGAGTG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 548
               + +     +G T+YPPLS+  A   G ++DL++  +H+ GISS             
Sbjct: 123 VISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKY 182

Query: 549 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP-F 725
                 +F  + ++  ++ +T+            AIT LL DRN+N++ +D    GDP  
Sbjct: 183 NRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVI--GDPVL 240

Query: 726 YINIYXDF 749
           Y +++  F
Sbjct: 241 YQHLFWFF 248


>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
           cellular organisms|Rep: Cytochrome C oxidase subunit I -
           Rhizobium loti (Mesorhizobium loti)
          Length = 623

 Score = 64.9 bits (151), Expect = 2e-09
 Identities = 52/189 (27%), Positives = 74/189 (39%), Gaps = 1/189 (0%)
 Frame = +3

Query: 156 ELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           +L  P +  IG D+ YN I T H                    LVPL++G   IAFPR+N
Sbjct: 57  QLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVGTRHIAFPRLN 114

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
              +               V+ G   G   Y PLS      G+  D+    +    +S+ 
Sbjct: 115 AFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMITFTEVSAL 174

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             S D++PLFV ++ +T+F           A T L+ DR + T 
Sbjct: 175 AIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRLVGTH 234

Query: 693 FFDPAGGGD 719
           FF+PA GGD
Sbjct: 235 FFNPAEGGD 243


>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
           polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
           (Liverwort)
          Length = 434

 Score = 64.5 bits (150), Expect = 3e-09
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +3

Query: 156 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PG+ I  G+ Q+YN ++TAHA                 N  VP+++G+PD+AFPR+
Sbjct: 42  ELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRL 101

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 422
           NNI F              +VE G G+G TV
Sbjct: 102 NNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132



 Score = 33.5 bits (73), Expect = 6.6
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 59  YSTNHKDIGTLYFIF 103
           +STNHKDIGTLY IF
Sbjct: 10  FSTNHKDIGTLYLIF 24


>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
           Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
           - Aeropyrum pernix
          Length = 815

 Score = 63.7 bits (148), Expect = 5e-09
 Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
 Frame = +3

Query: 276 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAH 452
           N +VPL +GA D+AFPR+N + +                E+GA   G T+Y PL++ I  
Sbjct: 88  NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYT 147

Query: 453 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 632
            G  +DLA  ++ L  +S                     + ++P+F  ++  T       
Sbjct: 148 PGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWA 207

Query: 633 XXXXAGAITILLTDRNLNTSFF-DPAGG 713
                    +LL DRNL T FF +PAGG
Sbjct: 208 FPPLMVGGALLLLDRNLGTEFFLNPAGG 235


>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
           Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
           - Halobacterium salinarium (Halobacterium halobium)
          Length = 593

 Score = 63.3 bits (147), Expect = 7e-09
 Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 2/200 (1%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           EL      +    +YN ++T+H                  N  +PL++ A D+AFPRIN 
Sbjct: 96  ELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAFPRINA 154

Query: 336 IRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           I F              ++     A T  T+Y PLS  ++    +VD+ +  LHL G+S+
Sbjct: 155 IAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHLTGVSA 212

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                               +  L +F   +   +            A+ +LL DRN  T
Sbjct: 213 TMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLDRNFGT 272

Query: 690 SFFDPAGGGDPFYINIYXDF 749
           +FF  AGG   F+ +++  F
Sbjct: 273 TFFTVAGGDPIFWQHLFWFF 292


>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
           Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
           1 - Corynebacterium glutamicum (Brevibacterium flavum)
          Length = 584

 Score = 63.3 bits (147), Expect = 7e-09
 Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 1/200 (0%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           AEL  PG     ++ +N + T H                  N ++PL +GAPD+AFPR+N
Sbjct: 65  AELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIGAPDVAFPRLN 123

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
              F              +   GA   G T+Y PLS  I   G   D+ I  +   GI S
Sbjct: 124 AFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWIVGVGATGIGS 183

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              +  ++P+F   + + +            A   +L DR L  
Sbjct: 184 VASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAALGVLYDRKLGG 243

Query: 690 SFFDPAGGGDPFYINIYXDF 749
             +DPA GG   + +++  F
Sbjct: 244 HLYDPANGGSLLWQHLFWFF 263


>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
           lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 457

 Score = 62.9 bits (146), Expect = 9e-09
 Identities = 39/99 (39%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL N GS  L G+ Q +N ++TAHA                 N L+PL+LGA D+AF R+
Sbjct: 44  ELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARL 103

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 446
           NNI F              +VE GAGTG TV    SS +
Sbjct: 104 NNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142


>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
           1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
           thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
           (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579)
          Length = 791

 Score = 62.1 bits (144), Expect = 2e-08
 Identities = 50/200 (25%), Positives = 75/200 (37%), Gaps = 1/200 (0%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           +L  P +     + YN I+T H                  N +VPL+LGA D+A PR+N 
Sbjct: 52  QLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRVNA 111

Query: 336 IRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
             +                  GA   G T Y P S   A     VD  + ++ L G SS 
Sbjct: 112 FSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLLGFSSL 168

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             S  ++P++V +V   +            A  ++L +R +  S
Sbjct: 169 LGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIGLS 228

Query: 693 FFDPAGGGDPFYINIYXDFW 752
           +F+PA GGDP     +  FW
Sbjct: 229 WFNPAVGGDPVLFQQF--FW 246


>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
           Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
           1 - Beggiatoa sp. PS
          Length = 525

 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 54/198 (27%), Positives = 78/198 (39%), Gaps = 3/198 (1%)
 Frame = +3

Query: 156 ELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           EL   G  I DD  +YNT +  H                  N  +PL++GA D+AFPR+N
Sbjct: 42  ELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAFPRVN 101

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
            +                 + +      T YPP S  I H   +     FS+ L G +S 
Sbjct: 102 ALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVLLLGFASI 158

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILLTDRNLNT 689
                              +++L +FV A  + AF          G A+T+L  D+ + T
Sbjct: 159 LGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLTFDKYIGT 217

Query: 690 SFFDPAGGGDPF-YINIY 740
            FFD A GGD   Y N++
Sbjct: 218 HFFDAAAGGDALTYQNLF 235


>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
           Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
           subtilis
          Length = 649

 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 1/197 (0%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           A+L  P +   D   YN I T H                  N +VPL +GA D+AFP +N
Sbjct: 80  AQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAFPYLN 138

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
           N+ F              ++      G T Y PL+SN    G   +  +  L +AGI + 
Sbjct: 139 NLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAGIGTL 198

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             +  ++P+F     IT             A+ +L  DR     
Sbjct: 199 MTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRLFGAH 258

Query: 693 FFDPAGGGDP-FYINIY 740
           FF    GG P  + N++
Sbjct: 259 FFTLEAGGMPMLWANLF 275


>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Blastopirellula marina DSM 3645|Rep: Cytochrome c
           oxidase subunit I - Blastopirellula marina DSM 3645
          Length = 595

 Score = 61.3 bits (142), Expect = 3e-08
 Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 4/177 (2%)
 Frame = +3

Query: 192 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 371
           + Y  +VT HA                 N L+PL++GA D+AFP +N + +         
Sbjct: 86  EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145

Query: 372 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 539
                  + +GA  G T YPPLS   ++    G +  L +  +   G+SS          
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205

Query: 540 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG 710
                    +  +LPL + A+ ITA            A  ++L DR + T FF P G
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEG 262


>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
           Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
           RS-1
          Length = 641

 Score = 60.5 bits (140), Expect = 5e-08
 Identities = 48/188 (25%), Positives = 68/188 (36%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           +LG P +      +YN + T H                  N +VPL++GA D+AFPR+N 
Sbjct: 59  QLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMIGARDMAFPRLNA 117

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           +                 V      G   Y PL+         VD  I  + L G++S  
Sbjct: 118 LSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWIVGIGLTGVASIA 177

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                            + +++PLFV    + AF           A   LL DR+  T F
Sbjct: 178 GALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRHFGTRF 237

Query: 696 FDPAGGGD 719
           F P  GGD
Sbjct: 238 FLPNLGGD 245


>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
           Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
           subunit I - Myrmarachne sp. G FSC-2006
          Length = 129

 Score = 59.3 bits (137), Expect = 1e-07
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 387 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           +VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12  MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52


>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
           Kluyveromyces thermotolerans|Rep: Putative DNA
           endonuclease - Kluyveromyces thermotolerans (Yeast)
          Length = 542

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +3

Query: 156 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL  PG+  L G+ Q++N +V  HA                 N L+PL++GA D++F R+
Sbjct: 39  ELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFARL 98

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 422
           NNI F              +VE+GAGTG TV
Sbjct: 99  NNISFWLLPPALVCLVTSTLVESGAGTGWTV 129


>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
           cellular organisms|Rep: Cytochrome C oxidase subunit I
           /III - Pyrobaculum aerophilum
          Length = 800

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 6/155 (3%)
 Frame = +3

Query: 276 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 452
           N LVP ++GAPD+ +PRIN + F              +  ++G   G T+YPPLS+    
Sbjct: 86  NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143

Query: 453 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 632
           +   VDL +  + +AG SS                       + LF  +V   +      
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203

Query: 633 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDP 722
               A    +LL +R+L   FF     DPA  GDP
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDP 238


>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
           oxidase, subunit 1; n=2; Thermoprotei|Rep:
           Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
           Cenarchaeum symbiosum
          Length = 508

 Score = 55.6 bits (128), Expect = 1e-06
 Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 2/198 (1%)
 Frame = +3

Query: 153 AELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           AEL  PG+  I D   +N + T H                  N  VP+++   D+A+P++
Sbjct: 47  AELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMVRYKDMAYPKL 105

Query: 330 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 509
           N I F                 +   T     PP S  I+  G + D+ IF L + GISS
Sbjct: 106 NAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWIFGLKILGISS 159

Query: 510 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 689
                              S  Q+PL   +   ++          A A+ +LLTDR   +
Sbjct: 160 ILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALLMLLTDRLGVS 219

Query: 690 SFFDPAGGGDPF-YINIY 740
            FF+PA GGDP  Y +++
Sbjct: 220 GFFNPAVGGDPIAYAHLF 237


>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
           n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
           subunit I - Chromobacterium violaceum
          Length = 680

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 1/156 (0%)
 Frame = +3

Query: 276 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 455
           N +VPL +GA D+AFP +N++ F               V N A TG   YPPL+      
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184

Query: 456 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 635
              VD  I++L ++GI +                       +P+F               
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244

Query: 636 XXXAGAITILLTDRNLNTSFFD-PAGGGDPFYINIY 740
               GA+ +L  DR L+  FF    GG    Y+N++
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLF 280


>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
           (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
           1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
           Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
           oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
           BO(3) subunit 1) - Pseudomonas putida
          Length = 672

 Score = 54.0 bits (124), Expect = 4e-06
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 1/156 (0%)
 Frame = +3

Query: 276 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 455
           N  VPL +GA D+AFP +N++ F               V   A TG   YPPL+      
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183

Query: 456 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 635
           G  VD  I++L L+G+ +                       +P+F               
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243

Query: 636 XXXAGAITILLTDRNLNTSFFDPAGGGDP-FYINIY 740
                A+ +L  DR L+   F    GG+P  Y+N++
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLF 279


>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
           aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
           polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
           subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
          Length = 622

 Score = 54.0 bits (124), Expect = 4e-06
 Identities = 39/188 (20%), Positives = 70/188 (37%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           +L  P +     Q YN ++T H                  N +VPL +GA D++FP +N 
Sbjct: 52  QLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSFPFLNA 110

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
           + F               +      G T Y  LS  +  +G  +D  +  L ++G+ +  
Sbjct: 111 LGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFVLGLQISGLGTLI 168

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                            ++ +LPLF     + +             + +++ DR   T+F
Sbjct: 169 AGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRLFGTNF 228

Query: 696 FDPAGGGD 719
           F+P  GG+
Sbjct: 229 FNPELGGN 236


>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
           Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
           I - Pachymerium ferrugineum
          Length = 219

 Score = 51.2 bits (117), Expect = 3e-05
 Identities = 50/195 (25%), Positives = 62/195 (31%)
 Frame = +2

Query: 104 WYLIRNNWNIFKTFNSS*IRKSRIINWR*SNL*YYCNSACXXXXXXXXXXXXXWRIWKLX 283
           WYL RN+ +  KT      + +R       NL  YC  +C               I KL 
Sbjct: 7   WYLSRNSSDCPKTNCPPWTKTTRNSYRGRPNLQRYCYCSCLRYNFLYSNTYYNSGIRKLN 66

Query: 284 XXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKI 463
                       P NK +KIL  TPL Y  N    C K C + +NSLP     Y T    
Sbjct: 67  TPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPF 126

Query: 464 RRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCF 643
           R   +F  T                                 CM   +YS      +   
Sbjct: 127 RSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSI 186

Query: 644 SWSYYNIINRSKLKY 688
             S+YNI    K KY
Sbjct: 187 GSSHYNITYWPKPKY 201


>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
           polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=20; cellular organisms|Rep: Alternative
           Cytochrome c oxidase polypeptide I (Cytochrome BB3
           subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
           marina ATCC 23134
          Length = 635

 Score = 50.8 bits (116), Expect = 4e-05
 Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 4/175 (2%)
 Frame = +3

Query: 186 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 365
           + + Y  +VT H                  N L+PL +GA D+A   +N + +       
Sbjct: 98  EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157

Query: 366 XXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 533
                   +E G  +G   +YPPLS+    ++  G  + + + S+ L  IS         
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217

Query: 534 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 698
                      SF +LPL + A  ITA            A  +L+ DR+L TSFF
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFF 272


>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
           shibae DFL 12|Rep: Cytochrome-c oxidase -
           Dinoroseobacter shibae DFL 12
          Length = 853

 Score = 50.8 bits (116), Expect = 4e-05
 Identities = 36/147 (24%), Positives = 57/147 (38%)
 Frame = +3

Query: 282 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 461
           L+PL++GA D+ FPR+    +              + +     G  +Y PLS++    G 
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183

Query: 462 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 641
           S D  +  + LA I+S                   S  ++P+ +  +  TAF        
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPP 243

Query: 642 XAGAITILLTDRNLNTSFFDPAGGGDP 722
                 +L  +R L   FFD   GGDP
Sbjct: 244 LIIGSILLEAERLLGLPFFDHTLGGDP 270


>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
           Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
           cenocepacia MC0-3
          Length = 1004

 Score = 50.0 bits (114), Expect = 7e-05
 Identities = 45/189 (23%), Positives = 68/189 (35%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           +L  P + +     Y+++ T H                  N L PL+LG+ D+AFPR+  
Sbjct: 77  QLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLMLGSRDMAFPRLTA 135

Query: 336 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 515
             +               +      G   Y PL+S     G ++D+    + L GIS+  
Sbjct: 136 FSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYGLGMILLGISTTG 195

Query: 516 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 695
                            S D+LP+ V      +          + A  +L  DRN  T F
Sbjct: 196 GAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFLLLWLDRNAGTHF 255

Query: 696 FDPAGGGDP 722
           FD A GG P
Sbjct: 256 FDVAHGGRP 264


>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
           Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
           Roseovarius nubinhibens ISM
          Length = 818

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 42/189 (22%), Positives = 65/189 (34%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           A+L  P S     + YN + T H                    L+P +LG+ D+AFPR+ 
Sbjct: 56  AQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDLAFPRLT 114

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
              F              +      +G  +YPPLSS +   G + D  +  +    IS+ 
Sbjct: 115 AYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITFVEISAI 174

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             S  ++P+F     +TA               +L  +R  +  
Sbjct: 175 AAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSILLELERAFDMP 234

Query: 693 FFDPAGGGD 719
           FF  A GGD
Sbjct: 235 FFQAAAGGD 243


>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
           Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
           eutropha (strain C71)
          Length = 703

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 42/159 (26%), Positives = 58/159 (36%)
 Frame = +3

Query: 276 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 455
           N +VPL +GA D+AFP +N+I                +V   +  G   YPP +  + + 
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203

Query: 456 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 635
           G  VD  I+SL LA + S                       +PLF      TA       
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263

Query: 636 XXXAGAITILLTDRNLNTSFFDPAGGGDPFYINIYXDFW 752
                    L  DR L+  FF    GG+   +N    FW
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGN--QMNFLNMFW 300


>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
           n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
           ubiquinol oxidase subunit I - Carsonella ruddii (strain
           PV)
          Length = 606

 Score = 47.2 bits (107), Expect = 5e-04
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 1/155 (0%)
 Frame = +3

Query: 276 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 455
           N ++PL +G+ D+AFP +N + F              I+   A TG   YPPLS      
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178

Query: 456 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 635
              VD   +S+ ++GI +                    F+++ +F+     +        
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238

Query: 636 XXXAGAITILLTDRNLNTSFFDP-AGGGDPFYINI 737
                 +  +  DR L+T F+    GG    YIN+
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINL 273


>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
           Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
           - Celatoblatta vulgaris
          Length = 134

 Score = 47.2 bits (107), Expect = 5e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +2

Query: 593 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF 697
           M C +YS      +TC  WSYYN IN SKLKYI+F
Sbjct: 84  MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILF 118


>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
           subunit I - Planctomyces maris DSM 8797
          Length = 606

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 3/176 (1%)
 Frame = +3

Query: 192 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 371
           + Y  + T HA                 N L+PL++GA D+AFP++N + +         
Sbjct: 90  EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149

Query: 372 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 542
                    G   G T YP    L+      G +    +  +   G SS           
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209

Query: 543 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG 710
                   +F +LP+ +  + ITA               + + DR   T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSG 265


>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Alternative cytochrome c oxidase
           polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
           oxidase polypeptide I) (Cytochrome BB3 subunit 1)
           (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
          Length = 591

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 5/188 (2%)
 Frame = +3

Query: 156 ELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           +LG PG+    D   Y   +T H                  N L+PL++GA D+ FP +N
Sbjct: 66  QLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVN 125

Query: 333 NIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIFSLHLAGI 503
            + +               V  G  G G T+YPP  + S    +   + L + SL L  I
Sbjct: 126 MLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLILFII 185

Query: 504 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAITILLTDRN 680
                                +  +LPL V  +   T            G++ +LL DR 
Sbjct: 186 GFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLLL-DRL 244

Query: 681 LNTSFFDP 704
           L TSFF P
Sbjct: 245 LGTSFFMP 252


>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
           Bacteria|Rep: Cytochrome C oxidase subunit I -
           Symbiobacterium thermophilum
          Length = 628

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 44/203 (21%), Positives = 73/203 (35%), Gaps = 5/203 (2%)
 Frame = +3

Query: 156 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 335
           +L  PG  +   + +N + T HA                 N  +PL++GA D+AFPR+N 
Sbjct: 57  QLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMIGARDVAFPRLNA 115

Query: 336 IRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 503
             +              ++    G     G   Y  L+S     G   D     L L GI
Sbjct: 116 FSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGPDFWTLGLLLLGI 175

Query: 504 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 683
            +                   +  ++P+FV    +T+            A+ +L+ DR  
Sbjct: 176 GTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVTVALIMLMFDRTF 235

Query: 684 NTSFFDPAGGGD-PFYINIYXDF 749
             +FF+   GG   FY +++  F
Sbjct: 236 AANFFEVLRGGSVVFYQHLFWTF 258


>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
           flagellatus KT|Rep: Cytochrome-c oxidase -
           Methylobacillus flagellatus (strain KT / ATCC 51484 /
           DSM 6875)
          Length = 631

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 35/147 (23%), Positives = 54/147 (36%)
 Frame = +3

Query: 282 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 461
           ++PL+LG  D+ FPR+N   +              ++      G   YPPL+      G 
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164

Query: 462 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 641
            +D     +    IS+                   S +++P+FV AV + +F        
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPP 224

Query: 642 XAGAITILLTDRNLNTSFFDPAGGGDP 722
              A  +L  DR     FF  A  GDP
Sbjct: 225 LVIASLMLALDRMAGMHFF-TAASGDP 250


>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
           n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
           polypeptide I/III - Picrophilus torridus
          Length = 841

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 1/157 (0%)
 Frame = +3

Query: 282 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 458
           L+PL +G+ D+ +PR+N + +               +  G   TG TVY PLSS      
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170

Query: 459 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 638
              D A  ++ L GI +                       LPLFV AV   A        
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230

Query: 639 XXAGAITILLTDRNLNTSFFDPAGGGDPFYINIYXDF 749
              G   +LL    ++ S++    GG   + N++  F
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGGALMWENLFWYF 267


>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
           Proteobacteria|Rep: Quinol oxidase subunit I -
           Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
          Length = 825

 Score = 44.0 bits (99), Expect = 0.005
 Identities = 39/189 (20%), Positives = 66/189 (34%)
 Frame = +3

Query: 153 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 332
           A+L +P S     + Y  + T H                    L+P +LG+ D+A+PR++
Sbjct: 56  AQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDLAYPRLS 114

Query: 333 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 512
              F              +      +G  +YPPL+S +   G + D  +  +    IS+ 
Sbjct: 115 AYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITFVEISAI 174

Query: 513 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTS 692
                             S D++P++     +TA               +L  +R     
Sbjct: 175 AAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSILLELERAFGLP 234

Query: 693 FFDPAGGGD 719
           FF  A GGD
Sbjct: 235 FFQVAEGGD 243


>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
           Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
           Sulfolobus acidocaldarius
          Length = 788

 Score = 41.9 bits (94), Expect = 0.019
 Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 1/150 (0%)
 Frame = +3

Query: 276 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 452
           N LVP ++GA D+ +P+IN + F              ++      G  +Y PLS     +
Sbjct: 80  NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138

Query: 453 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 632
            G   +L   +L L+G+SS                    + ++PLFV     TA      
Sbjct: 139 YGLGTNLIQIALILSGLSS--TLTGVNFVMTITKMKKVPYLKMPLFVWGFFTTAILMIIA 196

Query: 633 XXXXAGAITILLTDRNLNTSFFDPAGGGDP 722
                  +     +R   T FFD A GG P
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSP 226


>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
           Deinococcus|Rep: Cytochrome c oxidase, subunit I -
           Deinococcus radiodurans
          Length = 820

 Score = 40.7 bits (91), Expect = 0.044
 Identities = 39/185 (21%), Positives = 60/185 (32%)
 Frame = +3

Query: 198 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 377
           YN ++T HA                 N  +PL LG  D+A PR+N               
Sbjct: 74  YNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVV 133

Query: 378 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 557
                      G T Y PL+ +    G SV +   ++ L G+ S                
Sbjct: 134 LGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMV--AVILNGLGSLLGSANFAATIVNLRA 191

Query: 558 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPFYINI 737
                 ++P+F  ++  T+            A  +   +  L  S F+P  GG P     
Sbjct: 192 PGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQ 251

Query: 738 YXDFW 752
           +  FW
Sbjct: 252 F--FW 254


>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
           Rhodobacteraceae|Rep: Cytochrome c, monohaem -
           Rhodobacter sphaeroides ATCC 17025
          Length = 878

 Score = 40.7 bits (91), Expect = 0.044
 Identities = 30/147 (20%), Positives = 53/147 (36%)
 Frame = +3

Query: 282 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 461
           L+P +LGA D+ FPR++   +              + +    +G  +YPPL++     G 
Sbjct: 126 LLPALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGL 183

Query: 462 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 641
             D+ +  L    ++S                     + +PL+   V +           
Sbjct: 184 GSDIWLLGLSFIEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPP 243

Query: 642 XAGAITILLTDRNLNTSFFDPAGGGDP 722
                 +   +R  +  FFDP  GGDP
Sbjct: 244 LIAGDLLFEMERGFDWPFFDPERGGDP 270


>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
           Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
           Mesorhizobium sp. (strain BNC1)
          Length = 845

 Score = 40.3 bits (90), Expect = 0.058
 Identities = 40/182 (21%), Positives = 60/182 (32%)
 Frame = +3

Query: 177 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 356
           L+G D  YN I T H                    L+P +L A D+ FPR++        
Sbjct: 75  LVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYI 132

Query: 357 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 536
                       +     G  +YPPL+      G + D  +  +    IS+         
Sbjct: 133 VGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIV 192

Query: 537 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGG 716
                     S  ++P+F  A+ I A            A  +L  +R+    FF    GG
Sbjct: 193 GTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATMLLEIERSFGWPFFTAERGG 252

Query: 717 DP 722
           DP
Sbjct: 253 DP 254


>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
           Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
           bacterium (strain Ellin345)
          Length = 595

 Score = 39.5 bits (88), Expect = 0.10
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 5/188 (2%)
 Frame = +3

Query: 162 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 341
           G PG ++   + Y +++T H                  N  +P+ +GA D+AFPR N + 
Sbjct: 75  GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133

Query: 342 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 506
           F               + +G   +G T Y  LS+    A  G +    ++ + +A   I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193

Query: 507 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 686
           S                   S  ++P+   A  IT+            A  +L  DR   
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253

Query: 687 TSFFDPAG 710
           TSFF P+G
Sbjct: 254 TSFFIPSG 261


>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
           Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 854

 Score = 38.7 bits (86), Expect = 0.18
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 2/143 (1%)
 Frame = +3

Query: 276 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS--SNIA 449
           N LVPL +GA D+AFPR+N + +                      G T+Y PL+  + I 
Sbjct: 89  NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIP 148

Query: 450 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 629
             G      + +L +   +                        +P+F  ++ +T +    
Sbjct: 149 GEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLF 208

Query: 630 XXXXXAGAITILLTDRNLNTSFF 698
                  A+ IL +D  L T++F
Sbjct: 209 AFAALLAALMILASDHILGTTYF 231


>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
           Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
           subunit I - Tetragona dorsalis ziegleri
          Length = 111

 Score = 37.9 bits (84), Expect = 0.31
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = +3

Query: 573 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 722
           DQ+ LF  ++ IT           AG IT+LL+DRN N  FF   GG  P
Sbjct: 12  DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYP 61


>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
           Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
           Tetrahymena pyriformis
          Length = 698

 Score = 37.9 bits (84), Expect = 0.31
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 156 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 329
           EL +P S    GD   Y  +VTAH                  N L+P  +G+ D+A+PR+
Sbjct: 88  ELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRL 147

Query: 330 NNIRF 344
           N+I F
Sbjct: 148 NSIGF 152



 Score = 35.9 bits (79), Expect = 1.2
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
 Frame = +3

Query: 411 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 581
           G T   P SSNI + G  S D+ I S+  AGIS+                      +  +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342

Query: 582 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 722
           P    ++ +T             A+ ++  DR+  T+FF+ A GGDP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDP 389


>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
           Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
           sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 607

 Score = 37.5 bits (83), Expect = 0.41
 Identities = 32/147 (21%), Positives = 53/147 (36%)
 Frame = +3

Query: 282 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 461
           L+P +LGA D+ FPR++   F               V      G  + PPL++     G 
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226

Query: 462 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 641
           + D  +  +    IS+                   +  ++P+F  A+ + A         
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286

Query: 642 XAGAITILLTDRNLNTSFFDPAGGGDP 722
              A  +L  +R  +  FF    GGDP
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDP 313


>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
           subunit I - Eutetramorium sp. BLF m1
          Length = 201

 Score = 37.1 bits (82), Expect = 0.54
 Identities = 27/78 (34%), Positives = 35/78 (44%)
 Frame = +3

Query: 456 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 635
           G    L IFSL +   S                    + D++ L   ++ ITA       
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183

Query: 636 XXXAGAITILLTDRNLNT 689
              AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201


>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
           cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
           cryptum (strain JF-5)
          Length = 689

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 1/156 (0%)
 Frame = +3

Query: 276 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 455
           N +VPL +GA D+AFP +N +                 V + +  G     PL+      
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202

Query: 456 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 635
           G  VD  ++++ +  + +                   ++ +LP  V     T        
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262

Query: 636 XXXAGAITILLTDRNLNTSFFDPAGGGD-PFYINIY 740
                A+ +L  DR L T FF    GG+   Y N++
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLF 298


>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
           polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
           (Liverwort)
          Length = 802

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 59  YSTNHKDIGTLYFIF 103
           +STNHKDIGTLY IF
Sbjct: 10  FSTNHKDIGTLYLIF 24


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,405,573
Number of Sequences: 1657284
Number of extensions: 10938407
Number of successful extensions: 23918
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 21997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23664
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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