Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_D19
(909 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 92 2e-17
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 65 2e-09
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 62 1e-08
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 61 4e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 2e-06
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 39 0.15
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 38 0.35
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 37 0.82
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 36 1.4
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 91.9 bits (218), Expect = 2e-17
Identities = 55/95 (57%), Positives = 60/95 (63%)
Frame = +1
Query: 394 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCXQKASKRPXTVK 573
+C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEEI--- 77
Query: 574 RPRCWRFSIGSAPLTSITKIDAQVRGGETRQXYKD 678
RPR RFSIGSAPLTSI K DAQ+ GGETRQ YKD
Sbjct: 78 RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKD 112
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/43 (76%), Positives = 34/43 (79%)
Frame = +1
Query: 550 SKRPXTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQXYKD 678
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQ YKD
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKD 44
Score = 34.7 bits (76), Expect = 3.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 692 PWXPPRCALLFRPCRLPEXWXAF 760
P P CALLFRPCRLP+ F
Sbjct: 49 PLEAPSCALLFRPCRLPDTCPPF 71
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = -1
Query: 558 PFAGLLXTCSFLRYPLILWITVLPPLSELIPLAAAERP 445
P L TCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 60.9 bits (141), Expect = 4e-08
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +1
Query: 568 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQXYKD 678
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQ YKD
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKD 80
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.6 bits (128), Expect = 2e-06
Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 358 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 525
CI + A AR AV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 161 DPDMIRYIDEFGQTTTRMQ 217
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 477 HSKAVIRLSTESGDNAGKNM 536
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 39.1 bits (87), Expect = 0.15
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 457 CGERYQLTQRR*YG--YPQNQGITQERTCXQKASKRPXTVKRPRCWRFSIGSAPLTSITK 630
C R Q R G +P+N I +R + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 631 IDAQVRGGETRQXYK 675
I Q + +T+ YK
Sbjct: 82 IYPQFKNTQTQHNYK 96
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 37.9 bits (84), Expect = 0.35
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -2
Query: 428 ERGSGRAPNTQTAXPRALADSLMQ 357
+R + APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 36.7 bits (81), Expect = 0.82
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +3
Query: 705 PVALSCSDPAAYRXTGPPFSLRXSVA 782
P+ALSCS+PA R PPFSL SVA
Sbjct: 43 PLALSCSNPAVSRIPVPPFSLAGSVA 68
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 35.9 bits (79), Expect = 1.4
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 356 SALMNRPTXGXRRFAYW 406
+ALMNRPT G RRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,755,451
Number of Sequences: 1657284
Number of extensions: 11008838
Number of successful extensions: 23391
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23378
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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