Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D19
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    33   0.24 
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    30   2.2  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.7  
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668...    29   6.7  

>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 609 PPDEHHKNRRSSQRWRNPTGL*RXQAXPPGXPPVALSCSDPAAYRXTGPPFS 764
           PP  HH +RR  +  + P    + Q  PP  PP      +PAA    G  FS
Sbjct: 40  PPHHHHHHRRRHRHSKKPKPQPQPQPPPPPLPPQQQQ-QEPAAGAGAGADFS 90


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
 Frame = +3

Query: 609 PPDEHHKNRRSSQRWRNPTGL*RXQAXPPGXPPV---ALSCSDPAAYRXTGPPFSLRXSV 779
           PP     N  S+     P  L   +   P   P      S S P AY    PP +LR ++
Sbjct: 175 PPQLSPANAHSTHHHAKPPSLPPAEPPVPSPSPEHPPRHSPSKPPAYAPAKPPTALRPAI 234

Query: 780 APFSXPXP 803
            P + P P
Sbjct: 235 PPAAMPKP 242


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 415 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCXQKASKRPXTV 570
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>01_05_0501 +
           22764978-22765896,22766087-22766349,22766613-22766836,
           22767419-22767749,22767968-22768372
          Length = 713

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +3

Query: 690 PPGXPPVALSCSDPAAYRXTG--PPFSLRXSVAPFSXPXP 803
           PP  PP       P AY  T   PP+S+  S+ P   P P
Sbjct: 79  PPPPPPPPPPVPVPPAYSVTSSVPPYSMTSSLPPSPRPPP 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,550,596
Number of Sequences: 37544
Number of extensions: 348327
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)