Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_D17
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    71   2e-13
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    31   0.16 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.6  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    27   3.5  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   4.6  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    26   8.1  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.1  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   8.1  

>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 40/148 (27%), Positives = 73/148 (49%)
 Frame = +2

Query: 326 ETILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELY 505
           E++LE +R  HEE ER   A+V   +      RE +  +H+     +++ E S +L   +
Sbjct: 3   ESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLVSH 62

Query: 506 EDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPA 685
           E  D L+ +E++ ++   +  EFY  L +I+EFH+K+P+     +S  +    +Q     
Sbjct: 63  ESSDRLKDQEVARINADDDLTEFYKSLGEIQEFHKKYPDHKVEDLSQLYSIKPSQPGIDE 122

Query: 686 EDSQFLSSH**RRLWKVXXLHSCYEKYL 769
            D+ F          +   L+ CYE+Y+
Sbjct: 123 IDTLFRGE---EMYGRFMDLNECYEEYI 147


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
 Frame = +2

Query: 332  ILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEAS--------- 484
            + +QQR+Y EE  R  +A  + +      + E +   + + ++HD Y+E++         
Sbjct: 785  VAKQQRAYEEEINRIWNAQKRGL---SINNLEELAKKYGINSIHDDYVESNEETTREETP 841

Query: 485  -----IRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 601
                 +R+  LY DK+G  + +   +  P     +  + ++I E
Sbjct: 842  SSDKVLRIVRLYRDKNGNLERKQETIHDPIVIHAYLKKRREIDE 885


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 431 INADHRLKNLHDRYIEASIRLKELYEDKDGLRKEE--ISALSGPHEFQEFYSRLKQIKEF 604
           ++  HR     D      IRLK+       L++E+      +   + + F ++LK I+ F
Sbjct: 416 VDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSF 475

Query: 605 HRKH 616
           H KH
Sbjct: 476 HEKH 479


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +2

Query: 317  LKMETILEQQRSYHEERERTMDAMVKEILH----KKTGHRETINADHRL-KNLHDRYI-- 475
            L +  ILE Q  Y     R    ++K +LH      T ++E  N+   L + LH  Y   
Sbjct: 1007 LLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHSTYTDE 1066

Query: 476  EASIRLKELYEDKDGLRKEEISAL 547
            E ++ L  L+  +  +R   + AL
Sbjct: 1067 ELNLLLSNLFHPESSIRSAVLQAL 1090


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/74 (22%), Positives = 38/74 (51%)
 Frame = +2

Query: 347 RSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLR 526
           ++ HEE    +D+ + E++ K+   +E      +++ + D   +    L+EL E+K+ + 
Sbjct: 178 QTVHEENTAALDSEIDELM-KQINEKE-----EKIEEISDETDKLQKLLRELDEEKEKVY 231

Query: 527 KEEISALSGPHEFQ 568
            EE    +  ++FQ
Sbjct: 232 AEEQEFYNNLNQFQ 245


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +2

Query: 398 ILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPH--EFQE 571
           I++ +   RE +N   R +    + +EA    +E  E+K        S++SG H  EF E
Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243

Query: 572 FYSRLKQ 592
           +   LK+
Sbjct: 244 YVESLKK 250


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +2

Query: 527 KEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAED 691
           +E  SA+   +  QEFY R+  +++  R  P+  +    + ++   N R+ P+ +
Sbjct: 153 EEATSAIDNLNS-QEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNN 206


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 268 YYCILQGD*HKTISITFKNGNNFRATTKLP*GKGKNHGRNGQRNSS 405
           +YCIL           FK+   +R  T  P  K K   R  QRNSS
Sbjct: 29  FYCILN-------ERAFKHYKTYRRITDCPEIKNKKSRRKNQRNSS 67


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 494 KELYEDKDGLRKEEISALSGPHEFQEFYSR 583
           KE  +++D L+KEE   +  P EF+ F  R
Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,848
Number of Sequences: 5004
Number of extensions: 60825
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)